Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   EQ843_RS17570 Genome accession   NZ_CP035184
Coordinates   3629491..3629817 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 11A1314CRGN088     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3630082..3633312 3629491..3629817 flank 265


Gene organization within MGE regions


Location: 3629491..3633312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQ843_RS17570 (EQ843_17570) hns 3629491..3629817 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  EQ843_RS17580 (EQ843_17580) - 3631258..3632088 (+) 831 WP_000854010.1 OXA-134 family carbapenem-hydrolyzing class D beta-lactamase OXA-237 -
  EQ843_RS17585 (EQ843_17585) - 3632222..3633312 (+) 1091 WP_094190431.1 IS4-like element ISAba1 family transposase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=335633 EQ843_RS17570 WP_000801427.1 3629491..3629817(-) (hns) [Acinetobacter baumannii strain 11A1314CRGN088]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=335633 EQ843_RS17570 WP_000801427.1 3629491..3629817(-) (hns) [Acinetobacter baumannii strain 11A1314CRGN088]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment