Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FYA05_RS06500 Genome accession   NZ_CP043211
Coordinates   1357905..1358420 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O16:H48 strain PG20180050     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352905..1363420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA05_RS06455 (FYA05_06455) csrA 1353492..1353677 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FYA05_RS06485 (FYA05_06485) yqaB 1355135..1355701 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FYA05_RS06490 (FYA05_06490) yqaA 1355698..1356126 (+) 429 WP_001287454.1 YqaA family protein -
  FYA05_RS06495 (FYA05_06495) gshA 1356199..1357755 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FYA05_RS06500 (FYA05_06500) luxS 1357905..1358420 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FYA05_RS06505 (FYA05_06505) emrB 1358484..1360022 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FYA05_RS06510 (FYA05_06510) emrA 1360039..1361211 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FYA05_RS06515 (FYA05_06515) emrR 1361338..1361868 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FYA05_RS06520 (FYA05_06520) ygaH 1361959..1362294 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FYA05_RS06525 (FYA05_06525) ygaZ 1362284..1363021 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=335630 FYA05_RS06500 WP_001130211.1 1357905..1358420(+) (luxS) [Escherichia coli O16:H48 strain PG20180050]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=335630 FYA05_RS06500 WP_001130211.1 1357905..1358420(+) (luxS) [Escherichia coli O16:H48 strain PG20180050]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment