Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AGROH133_RS11820 Genome accession   NC_015183
Coordinates   2384617..2385582 (+) Length   321 a.a.
NCBI ID   WP_013636757.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2379617..2390582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AGROH133_RS11795 (AGROH133_08369) - 2379908..2380852 (+) 945 WP_003514032.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  AGROH133_RS11800 (AGROH133_08371) - 2380849..2381343 (+) 495 WP_013636754.1 tripartite tricarboxylate transporter TctB family protein -
  AGROH133_RS11805 (AGROH133_08376) - 2381451..2382968 (+) 1518 WP_003514036.1 tripartite tricarboxylate transporter permease -
  AGROH133_RS11810 (AGROH133_08388) - 2383098..2383358 (+) 261 WP_013636755.1 hypothetical protein -
  AGROH133_RS11815 (AGROH133_08390) - 2383559..2384497 (+) 939 WP_013636756.1 siderophore ABC transporter substrate-binding protein -
  AGROH133_RS11820 (AGROH133_08392) ceuB 2384617..2385582 (+) 966 WP_013636757.1 ABC transporter permease Machinery gene
  AGROH133_RS11825 (AGROH133_08402) - 2385575..2386543 (+) 969 WP_013636758.1 iron chelate uptake ABC transporter family permease subunit -
  AGROH133_RS11830 (AGROH133_08413) - 2386540..2387298 (+) 759 WP_013636759.1 ABC transporter ATP-binding protein -
  AGROH133_RS11835 (AGROH133_08414) dps 2387424..2387912 (+) 489 WP_003514046.1 DNA starvation/stationary phase protection protein Dps -
  AGROH133_RS26570 (AGROH133_08415) - 2387990..2388211 (-) 222 WP_013636760.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34190.20 Da        Isoelectric Point: 11.0429

>NTDB_id=33558 AGROH133_RS11820 WP_013636757.1 2384617..2385582(+) (ceuB) [Agrobacterium tumefaciens]
MKSLSLILALLLALTLAIVSLFVGVSNVSLATLFAPDTSADALRVLLVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFV
EPSTAGTTESAGLGLLTVTLLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY
RFDLLQSLGAWMTGDFSGVLRGRYELLWIGFVFAIAAYLAADRFTVAGMGRDFTTNLGLNYRRVMALGLTIVSLVSAVVV
VTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLACDIIGRTVRAPYEIPIGTVVGVIGSALFLYLLLRKRHH
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=33558 AGROH133_RS11820 WP_013636757.1 2384617..2385582(+) (ceuB) [Agrobacterium tumefaciens]
GTGAAATCCCTGTCCCTCATCCTCGCCCTCCTTCTGGCGCTGACACTCGCCATCGTCAGCCTGTTCGTCGGCGTGAGCAA
CGTCTCGCTGGCGACGCTTTTTGCGCCGGATACGAGCGCGGATGCACTGCGCGTGCTCCTCGTCAGCCGCATTCCGCGCA
CGCTGGCGCTCATACTGGCCGGAAGCTCGATGGCGATTGCCGGTCTCATCATGCAGATGCTGGTGCGCAACCGCTTCGTG
GAGCCTTCGACGGCTGGCACCACCGAATCCGCCGGCCTTGGCCTGCTCACCGTCACCCTGCTTGCCCCGGAAACGCCGAT
CTTCGGCAAGATGTTGGTGGCCGCCGCTTTCGCGCTGGCTGGAACCGCACTTTTCCTGCGTATTCTGCGGCAGGTGCCGC
TGCGTGATGTGCTGCTGGTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATTTCTGCCGTCACCACTTTCTTCGCCTAT
CGTTTCGATTTGCTGCAATCGCTCGGCGCGTGGATGACCGGGGATTTTTCCGGCGTGCTGCGTGGCCGCTATGAATTGCT
GTGGATCGGCTTCGTTTTCGCCATCGCCGCCTATCTCGCCGCCGACCGTTTCACGGTGGCAGGCATGGGGCGCGACTTCA
CCACCAATCTCGGACTGAACTACCGCCGGGTAATGGCGCTCGGCCTCACCATCGTCTCGCTGGTCAGTGCCGTCGTCGTC
GTGACCGTCGGCATGATCCCTTTTCTCGGCCTGATTGTGCCGAATGTGGTCAGCCTGATGATCGGCGACAATATGCGCCG
TTCCGTGCCCTGGGTGGCGACGCTTGGCGCGGTCTTCGTTCTTGCCTGCGACATCATCGGCAGAACGGTGCGCGCGCCCT
ATGAGATACCGATCGGAACCGTGGTCGGCGTCATCGGCAGCGCGTTGTTCCTCTATCTCCTGCTCCGGAAACGCCACCAT
GCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.574

99.377

0.433

Multiple sequence alignment