Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AGROH133_RS06880 Genome accession   NC_015183
Coordinates   1404430..1405452 (-) Length   340 a.a.
NCBI ID   WP_013636085.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1399430..1410452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AGROH133_RS06865 (AGROH133_06060) - 1401183..1402037 (-) 855 WP_013636082.1 sugar phosphate isomerase/epimerase family protein -
  AGROH133_RS06870 (AGROH133_06062) - 1402166..1403335 (-) 1170 WP_013636083.1 Gfo/Idh/MocA family protein -
  AGROH133_RS06875 (AGROH133_06063) - 1403347..1404396 (-) 1050 WP_013636084.1 sugar phosphate isomerase/epimerase family protein -
  AGROH133_RS06880 (AGROH133_06064) cytR 1404430..1405452 (-) 1023 WP_013636085.1 LacI family DNA-binding transcriptional regulator Regulator
  AGROH133_RS06885 (AGROH133_06066) - 1405456..1406424 (-) 969 WP_013636086.1 ABC transporter permease -
  AGROH133_RS06890 (AGROH133_06077) - 1406426..1407370 (-) 945 WP_013636087.1 ABC transporter permease -
  AGROH133_RS06895 (AGROH133_06089) - 1407367..1408860 (-) 1494 WP_013636088.1 sugar ABC transporter ATP-binding protein -
  AGROH133_RS06900 (AGROH133_06090) - 1408980..1410002 (-) 1023 WP_013636089.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36603.69 Da        Isoelectric Point: 6.3976

>NTDB_id=33549 AGROH133_RS06880 WP_013636085.1 1404430..1405452(-) (cytR) [Agrobacterium tumefaciens]
MSKDQGSNIREVAALAGVSIATVSRALQQPDKVRPETRKKVFDAVRQANFVPNAQAASFRRQSNNTVILLVRDIGNPFYL
EIYKGVEEAAGEAGFKVLMGDARNDENRVATHIDMVRQKHADGLILMTGQFPSELLGQGDALPPIVIASETVPGIALPTV
KVDNRAASKNAVHHLIEAGHTKIAHLAGPFPESLAQERFEGYRDALEAAGIGYADELVVTGDYSIEAGRQAIAGLLENGI
SFTAIFASSDQMAIGAISELRGRGLSVPTDVSVIGFDDIIFANAFEPPLTTVRQPRQEMGRKAMALMVDRLNGKRTAETI
VLDTELVVRGSVAPCRSPHR

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=33549 AGROH133_RS06880 WP_013636085.1 1404430..1405452(-) (cytR) [Agrobacterium tumefaciens]
ATGAGCAAAGACCAAGGTTCGAATATCAGGGAAGTTGCAGCTCTCGCGGGCGTTTCGATCGCGACCGTGTCACGGGCGCT
GCAACAACCCGACAAAGTCCGCCCGGAAACGAGGAAGAAGGTTTTCGATGCCGTGAGGCAGGCGAACTTTGTTCCCAACG
CCCAGGCCGCAAGCTTCAGGCGTCAATCCAACAATACCGTCATTCTTCTCGTTCGCGATATCGGCAACCCGTTTTATCTC
GAGATCTACAAGGGCGTGGAGGAAGCGGCGGGGGAGGCGGGCTTCAAGGTGCTCATGGGCGACGCCCGTAACGACGAAAA
CCGCGTGGCGACACATATCGACATGGTCAGGCAGAAACATGCTGACGGCCTCATCCTGATGACCGGCCAGTTTCCTTCAG
AGCTTCTCGGTCAGGGTGACGCGCTGCCGCCGATCGTCATCGCTTCGGAAACCGTGCCAGGCATCGCGCTGCCCACCGTC
AAGGTCGATAACCGCGCCGCGTCCAAAAACGCCGTGCATCATCTGATCGAAGCAGGGCACACGAAGATCGCGCATCTCGC
CGGACCTTTTCCGGAAAGTCTGGCACAGGAGCGTTTCGAGGGCTACCGCGACGCGCTTGAGGCAGCGGGTATCGGTTACG
CGGATGAACTCGTCGTGACAGGCGATTACAGCATCGAAGCCGGTAGACAGGCGATTGCCGGACTTCTCGAAAACGGCATT
TCCTTCACCGCCATCTTCGCCTCGAGCGACCAGATGGCGATTGGCGCGATCAGCGAGCTGCGCGGGCGCGGGCTGTCCGT
GCCGACCGATGTCTCGGTCATTGGCTTCGACGATATAATTTTCGCCAATGCCTTCGAACCACCGCTAACGACAGTGCGCC
AGCCCCGGCAGGAAATGGGCCGCAAAGCCATGGCGCTGATGGTCGACCGGCTTAATGGCAAACGCACGGCCGAAACCATC
GTGCTGGATACGGAACTGGTGGTGCGCGGCTCGGTCGCGCCCTGCCGTTCGCCGCACCGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(172-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

44.242

97.059

0.429
  cytR Vibrio cholerae C6706

44.242

97.059

0.429

Multiple sequence alignment