Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EQJ08_RS18090 Genome accession   NZ_CP035167
Coordinates   3493191..3493880 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM104008     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3488191..3498880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS18055 (EQJ08_18055) flgN 3488371..3488853 (-) 483 WP_014481048.1 flagellar protein FlgN -
  EQJ08_RS18060 (EQJ08_18060) flgM 3488869..3489135 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQJ08_RS18065 (EQJ08_18065) yvyF 3489216..3489635 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  EQJ08_RS18070 (EQJ08_18070) comFC 3489709..3490431 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  EQJ08_RS18075 (EQJ08_18075) comFB 3490395..3490691 (-) 297 WP_003227989.1 late competence protein ComFB -
  EQJ08_RS18080 (EQJ08_18080) comFA 3490751..3492142 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  EQJ08_RS18085 (EQJ08_18085) fakBA 3492248..3493093 (-) 846 WP_003227986.1 DegV family protein -
  EQJ08_RS18090 (EQJ08_18090) degU 3493191..3493880 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EQJ08_RS18095 (EQJ08_18095) degS 3493963..3495120 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  EQJ08_RS18100 (EQJ08_18100) yvyE 3495337..3495990 (+) 654 WP_003227979.1 YigZ family protein -
  EQJ08_RS18105 (EQJ08_18105) tagV 3495990..3497165 (+) 1176 WP_128441886.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  EQJ08_RS18110 (EQJ08_18110) tagO 3497238..3498314 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=335469 EQJ08_RS18090 WP_003219701.1 3493191..3493880(-) (degU) [Bacillus subtilis strain SRCM104008]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=335469 EQJ08_RS18090 WP_003219701.1 3493191..3493880(-) (degU) [Bacillus subtilis strain SRCM104008]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment