Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQJ08_RS11030 Genome accession   NZ_CP035167
Coordinates   2180780..2181400 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104008     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2175780..2186400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS10990 (EQJ08_10990) ptsA 2176911..2177417 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  EQJ08_RS10995 (EQJ08_10995) ypqA 2177555..2177974 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  EQJ08_RS11000 (EQJ08_11000) sppG 2177995..2178372 (-) 378 WP_004398696.1 YppG family protein -
  EQJ08_RS11005 (EQJ08_11005) yppF 2178560..2178748 (+) 189 WP_003230690.1 YppF family protein -
  EQJ08_RS11010 (EQJ08_11010) yppE 2178787..2179158 (-) 372 WP_021481525.1 YppE family protein -
  EQJ08_RS11015 (EQJ08_11015) yppD 2179204..2179449 (-) 246 WP_041849959.1 DUF5446 family protein -
  EQJ08_RS11020 (EQJ08_11020) sspM 2179648..2179752 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  EQJ08_RS11025 (EQJ08_11025) yppC 2179777..2180739 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  EQJ08_RS11030 (EQJ08_11030) recU 2180780..2181400 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  EQJ08_RS11035 (EQJ08_11035) ponA 2181422..2184172 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  EQJ08_RS11040 (EQJ08_11040) ypoC 2184247..2184741 (-) 495 WP_041849962.1 YpoC family protein -
  EQJ08_RS11045 (EQJ08_11045) nth 2184738..2185397 (-) 660 WP_009967580.1 endonuclease III -
  EQJ08_RS11050 (EQJ08_11050) dnaD 2185416..2186114 (-) 699 WP_124048170.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=335437 EQJ08_RS11030 WP_004399067.1 2180780..2181400(+) (recU) [Bacillus subtilis strain SRCM104008]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=335437 EQJ08_RS11030 WP_004399067.1 2180780..2181400(+) (recU) [Bacillus subtilis strain SRCM104008]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment