Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EQJ08_RS08630 Genome accession   NZ_CP035167
Coordinates   1654157..1655050 (+) Length   297 a.a.
NCBI ID   WP_128441629.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104008     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1649157..1660050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS08610 (EQJ08_08610) - 1649827..1651557 (+) 1731 WP_021479298.1 hypothetical protein -
  EQJ08_RS08615 (EQJ08_08615) ylqH 1651554..1651835 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  EQJ08_RS08620 (EQJ08_08620) sucC 1652008..1653165 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  EQJ08_RS08625 (EQJ08_08625) sucD 1653194..1654096 (+) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  EQJ08_RS08630 (EQJ08_08630) dprA 1654157..1655050 (+) 894 WP_128441629.1 DNA-processing protein DprA Machinery gene
  EQJ08_RS08635 (EQJ08_08635) topA 1655238..1657313 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  EQJ08_RS08640 (EQJ08_08640) trmFO 1657389..1658696 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EQJ08_RS08645 (EQJ08_08645) xerC 1658764..1659678 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32890.14 Da        Isoelectric Point: 9.8232

>NTDB_id=335432 EQJ08_RS08630 WP_128441629.1 1654157..1655050(+) (dprA) [Bacillus subtilis strain SRCM104008]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKANGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=335432 EQJ08_RS08630 WP_128441629.1 1654157..1655050(+) (dprA) [Bacillus subtilis strain SRCM104008]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAATGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

41.729

89.562

0.374

Multiple sequence alignment