Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | EQI87_RS13285 | Genome accession | NZ_CP035166 |
| Coordinates | 2538706..2539116 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain SRCM103971 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2534072..2594012 | 2538706..2539116 | within | 0 |
Gene organization within MGE regions
Location: 2534072..2594012
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQI87_RS13260 (EQI87_13260) | yqeF | 2534239..2534970 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| EQI87_RS13265 (EQI87_13265) | cwlH | 2535222..2535974 (-) | 753 | WP_046381197.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| EQI87_RS13270 (EQI87_13270) | yqeD | 2536161..2536787 (+) | 627 | WP_046381198.1 | TVP38/TMEM64 family protein | - |
| EQI87_RS13275 (EQI87_13275) | gnd | 2536806..2537699 (-) | 894 | WP_015714298.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| EQI87_RS13280 (EQI87_13280) | yqeB | 2537951..2538673 (+) | 723 | WP_046381199.1 | hypothetical protein | - |
| EQI87_RS13285 (EQI87_13285) | nucA/comI | 2538706..2539116 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| EQI87_RS13290 (EQI87_13290) | - | 2539312..2539659 (+) | 348 | Protein_2558 | sigma-70 family RNA polymerase sigma factor | - |
| EQI87_RS13295 (EQI87_13295) | spoIVCA | 2539690..2541150 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| EQI87_RS21745 (EQI87_13300) | - | 2541108..2541286 (-) | 179 | Protein_2560 | hypothetical protein | - |
| EQI87_RS13305 (EQI87_13305) | arsC | 2541641..2542060 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| EQI87_RS13310 (EQI87_13310) | acr3 | 2542072..2543112 (-) | 1041 | WP_032722149.1 | arsenite efflux transporter Acr3 | - |
| EQI87_RS13315 (EQI87_13315) | arsK | 2543135..2543575 (-) | 441 | WP_032722151.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| EQI87_RS13320 (EQI87_13320) | arsR | 2543634..2543951 (-) | 318 | WP_029318103.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| EQI87_RS13325 (EQI87_13325) | yqcI | 2544323..2545087 (-) | 765 | WP_017696291.1 | YqcI/YcgG family protein | - |
| EQI87_RS13330 (EQI87_13330) | rapE | 2545530..2546657 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| EQI87_RS13335 (EQI87_13335) | phrE | 2546647..2546781 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| EQI87_RS13340 (EQI87_13340) | - | 2546891..2547049 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| EQI87_RS13345 (EQI87_13345) | yqcG | 2547419..2549014 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| EQI87_RS13350 (EQI87_13350) | yqcF | 2549029..2549607 (+) | 579 | WP_046160613.1 | type VII secretion system immunity protein YqcF | - |
| EQI87_RS13355 (EQI87_13355) | - | 2549717..2550190 (-) | 474 | WP_052720007.1 | hypothetical protein | - |
| EQI87_RS13360 (EQI87_13360) | - | 2550190..2550804 (-) | 615 | WP_046160614.1 | hypothetical protein | - |
| EQI87_RS13365 (EQI87_13365) | cwlA | 2550976..2551800 (-) | 825 | WP_046160615.1 | N-acetylmuramoyl-L-alanine amidase | - |
| EQI87_RS13370 (EQI87_13370) | skhD | 2551845..2552267 (-) | 423 | WP_003246208.1 | holin family protein | - |
| EQI87_RS13375 (EQI87_13375) | xepAK | 2552313..2553206 (-) | 894 | WP_046160616.1 | hypothetical protein | - |
| EQI87_RS13380 (EQI87_13380) | yqcE | 2553295..2553459 (-) | 165 | WP_041850053.1 | XkdX family protein | - |
| EQI87_RS13385 (EQI87_13385) | yqcD | 2553456..2553791 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| EQI87_RS13390 (EQI87_13390) | - | 2553801..2554895 (-) | 1095 | WP_046160617.1 | hypothetical protein | - |
| EQI87_RS13395 (EQI87_13395) | - | 2554899..2555171 (-) | 273 | WP_032722163.1 | hypothetical protein | - |
| EQI87_RS13400 (EQI87_13400) | yqcA | 2555168..2555746 (-) | 579 | WP_032722164.1 | YmfQ family protein | - |
| EQI87_RS13405 (EQI87_13405) | yqbT | 2555730..2556776 (-) | 1047 | WP_032722165.1 | baseplate J/gp47 family protein | - |
| EQI87_RS13410 (EQI87_13410) | yqbS | 2556769..2557194 (-) | 426 | WP_032722166.1 | DUF2634 domain-containing protein | - |
| EQI87_RS13415 (EQI87_13415) | yqbR | 2557207..2557473 (-) | 267 | WP_032722167.1 | DUF2577 family protein | - |
| EQI87_RS13420 (EQI87_13420) | yqbQ | 2557470..2558450 (-) | 981 | WP_032722168.1 | hypothetical protein | - |
| EQI87_RS13425 (EQI87_13425) | yqbP | 2558463..2559122 (-) | 660 | WP_032722169.1 | LysM peptidoglycan-binding domain-containing protein | - |
| EQI87_RS13430 (EQI87_13430) | yqbO | 2559115..2563872 (-) | 4758 | WP_043940167.1 | phage tail tape measure protein | - |
| EQI87_RS13435 (EQI87_13435) | - | 2563875..2564012 (-) | 138 | WP_021480099.1 | hypothetical protein | - |
| EQI87_RS13440 (EQI87_13440) | - | 2564054..2564503 (-) | 450 | WP_032722171.1 | phage portal protein | - |
| EQI87_RS13445 (EQI87_13445) | txpA | 2564649..2564828 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| EQI87_RS13450 (EQI87_13450) | bsrH | 2565208..2565297 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| EQI87_RS13455 (EQI87_13455) | yqbM | 2565551..2565994 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| EQI87_RS13460 (EQI87_13460) | yqbK | 2565997..2567397 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| EQI87_RS13465 (EQI87_13465) | - | 2567398..2567589 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| EQI87_RS13470 (EQI87_13470) | yqbJ | 2567586..2568023 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| EQI87_RS13475 (EQI87_13475) | yqbI | 2568036..2568539 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| EQI87_RS13480 (EQI87_13480) | yqbH | 2568536..2568898 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| EQI87_RS13485 (EQI87_13485) | gkpG | 2568895..2569290 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| EQI87_RS13490 (EQI87_13490) | yqbF | 2569294..2569605 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| EQI87_RS13495 (EQI87_13495) | skdG | 2569616..2570551 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| EQI87_RS13500 (EQI87_13500) | yqbD | 2570570..2571538 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| EQI87_RS13505 (EQI87_13505) | - | 2571571..2572224 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| EQI87_RS13510 (EQI87_13510) | yqbB | 2572265..2573182 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| EQI87_RS13515 (EQI87_13515) | yqbA | 2573179..2574711 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| EQI87_RS13520 (EQI87_13520) | stmB | 2574715..2576010 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| EQI87_RS13525 (EQI87_13525) | terS | 2576003..2576722 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| EQI87_RS13530 (EQI87_13530) | - | 2576790..2577254 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| EQI87_RS13535 (EQI87_13535) | yqaQ | 2577398..2577853 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| EQI87_RS13540 (EQI87_13540) | - | 2578051..2578980 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| EQI87_RS13545 (EQI87_13545) | yqaO | 2579054..2579260 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| EQI87_RS13550 (EQI87_13550) | yqaN | 2579342..2579770 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EQI87_RS13555 (EQI87_13555) | - | 2579866..2580015 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| EQI87_RS13560 (EQI87_13560) | sknM | 2580006..2580947 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| EQI87_RS13565 (EQI87_13565) | yqaL | 2580829..2581506 (-) | 678 | WP_116362964.1 | DnaD domain protein | - |
| EQI87_RS13570 (EQI87_13570) | recT | 2581582..2582436 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| EQI87_RS13575 (EQI87_13575) | yqaJ | 2582439..2583398 (-) | 960 | WP_128484053.1 | YqaJ viral recombinase family protein | - |
| EQI87_RS13580 (EQI87_13580) | - | 2583504..2583698 (-) | 195 | WP_003229905.1 | hypothetical protein | - |
| EQI87_RS13585 (EQI87_13585) | - | 2583658..2583831 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| EQI87_RS13590 (EQI87_13590) | sknH | 2583828..2584085 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| EQI87_RS13595 (EQI87_13595) | yqaG | 2584082..2584651 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| EQI87_RS13600 (EQI87_13600) | - | 2584725..2584865 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| EQI87_RS13605 (EQI87_13605) | yqaF | 2584895..2585125 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| EQI87_RS13610 (EQI87_13610) | sknR | 2585302..2585652 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
| EQI87_RS13615 (EQI87_13615) | - | 2585919..2586086 (-) | 168 | WP_003229900.1 | hypothetical protein | - |
| EQI87_RS13620 (EQI87_13620) | yqaC | 2586442..2586978 (-) | 537 | WP_004399117.1 | AAA family ATPase | - |
| EQI87_RS13625 (EQI87_13625) | yqaB | 2587247..2587765 (+) | 519 | WP_015714342.1 | ImmA/IrrE family metallo-endopeptidase | - |
| EQI87_RS13630 (EQI87_13630) | - | 2587771..2588163 (+) | 393 | Protein_2626 | sigma-70 family RNA polymerase sigma factor | - |
| EQI87_RS13635 (EQI87_13635) | - | 2588723..2589403 (-) | 681 | WP_046381200.1 | TetR/AcrR family transcriptional regulator C-terminal domain-containing protein | - |
| EQI87_RS13640 (EQI87_13640) | - | 2589534..2590877 (+) | 1344 | WP_046381201.1 | MATE family efflux transporter | - |
| EQI87_RS13645 (EQI87_13645) | - | 2591363..2592460 (-) | 1098 | WP_033884505.1 | glycosyl hydrolase | - |
| EQI87_RS13650 (EQI87_13650) | yrkJ | 2593233..2594012 (-) | 780 | WP_046381202.1 | sulfite exporter TauE/SafE family protein | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=335375 EQI87_RS13285 WP_009967785.1 2538706..2539116(-) (nucA/comI) [Bacillus subtilis strain SRCM103971]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=335375 EQI87_RS13285 WP_009967785.1 2538706..2539116(-) (nucA/comI) [Bacillus subtilis strain SRCM103971]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |