Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   AGROH133_RS02285 Genome accession   NC_015183
Coordinates   468581..468946 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 463581..473946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AGROH133_RS02270 (AGROH133_03866) - 465796..466173 (-) 378 WP_026330635.1 hypothetical protein -
  AGROH133_RS02275 (AGROH133_03870) - 466690..468285 (+) 1596 WP_236742462.1 globin-coupled sensor protein -
  AGROH133_RS02280 (AGROH133_03871) - 468285..468584 (+) 300 WP_013635450.1 STAS domain-containing protein -
  AGROH133_RS02285 (AGROH133_03872) scnR 468581..468946 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  AGROH133_RS02290 (AGROH133_03873) - 468963..471230 (+) 2268 WP_013635451.1 chemotaxis protein CheA -
  AGROH133_RS02295 (AGROH133_03874) cheR 471244..472152 (+) 909 WP_013635452.1 protein-glutamate O-methyltransferase CheR -
  AGROH133_RS02300 (AGROH133_03875) cheB 472149..473204 (+) 1056 WP_013635453.1 protein-glutamate O-methylesterase CheB -
  AGROH133_RS02305 (AGROH133_03876) cheY2 473204..473593 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=33537 AGROH133_RS02285 WP_003493773.1 468581..468946(+) (scnR) [Agrobacterium tumefaciens]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=33537 AGROH133_RS02285 WP_003493773.1 468581..468946(+) (scnR) [Agrobacterium tumefaciens]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCAGAACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAGACAATTCAGGCCGAAGACGGCATTGAGGGTCTCGAAGTGCTGGAGCAGAGCAACCCCGACGTCATCGTGACCGATA
TCAACATGCCCCGTCTTGACGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAGAAGTACCGGGCCATACCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGATCCTGCGAAGCTCATCGATGCCATTGAACGCGTAACTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364

Multiple sequence alignment