Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQI87_RS11480 Genome accession   NZ_CP035166
Coordinates   2224724..2225344 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103971     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2219724..2230344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI87_RS11440 (EQI87_11440) ptsA 2220855..2221361 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  EQI87_RS11445 (EQI87_11445) ypqA 2221499..2221918 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  EQI87_RS11450 (EQI87_11450) sppG 2221939..2222316 (-) 378 WP_046381139.1 YppG family protein -
  EQI87_RS11455 (EQI87_11455) yppF 2222504..2222692 (+) 189 WP_003230690.1 YppF family protein -
  EQI87_RS11460 (EQI87_11460) yppE 2222731..2223102 (-) 372 WP_003246080.1 YppE family protein -
  EQI87_RS11465 (EQI87_11465) yppD 2223148..2223393 (-) 246 WP_004398488.1 YppD family protein -
  EQI87_RS11470 (EQI87_11470) sspM 2223592..2223696 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  EQI87_RS11475 (EQI87_11475) yppC 2223721..2224683 (-) 963 WP_046381140.1 DUF2515 domain-containing protein -
  EQI87_RS11480 (EQI87_11480) recU 2224724..2225344 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  EQI87_RS11485 (EQI87_11485) ponA 2225366..2228098 (+) 2733 WP_046381141.1 PBP1A family penicillin-binding protein -
  EQI87_RS11490 (EQI87_11490) ypoC 2228174..2228668 (-) 495 WP_029726783.1 YpoC family protein -
  EQI87_RS11495 (EQI87_11495) nth 2228665..2229324 (-) 660 WP_009967580.1 endonuclease III -
  EQI87_RS11500 (EQI87_11500) dnaD 2229343..2230041 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=335359 EQI87_RS11480 WP_004399067.1 2224724..2225344(+) (recU) [Bacillus subtilis strain SRCM103971]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=335359 EQI87_RS11480 WP_004399067.1 2224724..2225344(+) (recU) [Bacillus subtilis strain SRCM103971]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment