Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EQI87_RS08265 Genome accession   NZ_CP035166
Coordinates   1533656..1533934 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM103971     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1528656..1538934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI87_RS08245 (EQI87_08245) panEB 1529844..1530755 (+) 912 WP_046380996.1 ketopantoate reductase family protein -
  EQI87_RS08250 (EQI87_08250) ampS 1530789..1532021 (-) 1233 WP_003232341.1 aminopeptidase -
  EQI87_RS08255 (EQI87_08255) ykpC 1532130..1532264 (-) 135 WP_003238865.1 protein YkpC -
  EQI87_RS08260 (EQI87_08260) mreBH 1532365..1533372 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  EQI87_RS08265 (EQI87_08265) abrB 1533656..1533934 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  EQI87_RS08270 (EQI87_08270) kinC 1534124..1535410 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  EQI87_RS08275 (EQI87_08275) ykqA 1535426..1536253 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  EQI87_RS08280 (EQI87_08280) ktrC 1536316..1536981 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  EQI87_RS08285 (EQI87_08285) ade 1537136..1538869 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=335354 EQI87_RS08265 WP_003244728.1 1533656..1533934(+) (abrB) [Bacillus subtilis strain SRCM103971]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=335354 EQI87_RS08265 WP_003244728.1 1533656..1533934(+) (abrB) [Bacillus subtilis strain SRCM103971]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment