Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FYA09_RS16900 Genome accession   NZ_CP043203
Coordinates   3439821..3440426 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O16:H48 strain PG20180058     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3434821..3445426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA09_RS16875 (FYA09_16875) aes 3434858..3435817 (+) 960 WP_000801813.1 acetyl esterase -
  FYA09_RS16880 (FYA09_16880) hemH 3435814..3436776 (-) 963 WP_001250103.1 ferrochelatase -
  FYA09_RS16890 (FYA09_16890) adk 3437012..3437656 (-) 645 WP_001220233.1 adenylate kinase -
  FYA09_RS16895 (FYA09_16895) htpG 3437837..3439711 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FYA09_RS16900 (FYA09_16900) recR 3439821..3440426 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FYA09_RS16905 (FYA09_16905) ybaB 3440426..3440755 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FYA09_RS16910 (FYA09_16910) dnaX 3440808..3442739 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  FYA09_RS16915 (FYA09_16915) apt 3442868..3443419 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FYA09_RS16920 (FYA09_16920) ybaN 3443572..3443949 (-) 378 WP_001188905.1 DUF454 family protein -
  FYA09_RS16925 (FYA09_16925) priC 3444019..3444546 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  FYA09_RS16930 (FYA09_16930) rsmS 3444560..3444721 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=335331 FYA09_RS16900 WP_001195025.1 3439821..3440426(-) (recR) [Escherichia coli O16:H48 strain PG20180058]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=335331 FYA09_RS16900 WP_001195025.1 3439821..3440426(-) (recR) [Escherichia coli O16:H48 strain PG20180058]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443