Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EQI56_RS18615 Genome accession   NZ_CP035165
Coordinates   3564998..3565687 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM103881     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3559998..3570687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI56_RS18580 (EQI56_18580) flgN 3560178..3560660 (-) 483 WP_014481048.1 flagellar protein FlgN -
  EQI56_RS18585 (EQI56_18585) flgM 3560676..3560942 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  EQI56_RS18590 (EQI56_18590) yvyF 3561023..3561442 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  EQI56_RS18595 (EQI56_18595) comFC 3561516..3562238 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  EQI56_RS18600 (EQI56_18600) comFB 3562202..3562498 (-) 297 WP_003227989.1 late competence protein ComFB -
  EQI56_RS18605 (EQI56_18605) comFA 3562558..3563949 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  EQI56_RS18610 (EQI56_18610) fakBA 3564055..3564900 (-) 846 WP_003227986.1 DegV family protein -
  EQI56_RS18615 (EQI56_18615) degU 3564998..3565687 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EQI56_RS18620 (EQI56_18620) degS 3565770..3566927 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  EQI56_RS18625 (EQI56_18625) yvyE 3567144..3567797 (+) 654 WP_003227979.1 YigZ family protein -
  EQI56_RS18630 (EQI56_18630) tagV 3567797..3568981 (+) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  EQI56_RS18635 (EQI56_18635) tagO 3569054..3570130 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=335307 EQI56_RS18615 WP_003219701.1 3564998..3565687(-) (degU) [Bacillus subtilis strain SRCM103881]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=335307 EQI56_RS18615 WP_003219701.1 3564998..3565687(-) (degU) [Bacillus subtilis strain SRCM103881]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment