Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   EQI56_RS16615 Genome accession   NZ_CP035165
Coordinates   3167523..3167663 (-) Length   46 a.a.
NCBI ID   WP_003220708.1    Uniprot ID   G4P060
Organism   Bacillus subtilis strain SRCM103881     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3162523..3172663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI56_RS16590 (EQI56_16590) yuxO 3162866..3163246 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  EQI56_RS16595 (EQI56_16595) comA 3163265..3163909 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  EQI56_RS16600 (EQI56_16600) comP 3163990..3166290 (-) 2301 WP_088300729.1 histidine kinase Regulator
  EQI56_RS16605 (EQI56_16605) comX 3166302..3166466 (-) 165 WP_015384519.1 competence pheromone ComX -
  EQI56_RS16610 (EQI56_16610) - 3166479..3167339 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  EQI56_RS16615 (EQI56_16615) degQ 3167523..3167663 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  EQI56_RS21835 - 3167885..3167947 (+) 63 Protein_3198 hypothetical protein -
  EQI56_RS16620 (EQI56_16620) - 3168126..3168494 (+) 369 WP_041850584.1 hypothetical protein -
  EQI56_RS16625 (EQI56_16625) pdeH 3168470..3169699 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  EQI56_RS16630 (EQI56_16630) pncB 3169836..3171308 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  EQI56_RS16635 (EQI56_16635) pncA 3171324..3171875 (-) 552 WP_043940186.1 isochorismatase family cysteine hydrolase -
  EQI56_RS16640 (EQI56_16640) yueI 3171972..3172370 (-) 399 WP_032726794.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5546.44 Da        Isoelectric Point: 6.2559

>NTDB_id=335302 EQI56_RS16615 WP_003220708.1 3167523..3167663(-) (degQ) [Bacillus subtilis strain SRCM103881]
MEKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=335302 EQI56_RS16615 WP_003220708.1 3167523..3167663(-) (degQ) [Bacillus subtilis strain SRCM103881]
ATGGAAAAGAAACTTGAAGAAGTAAAACAATTGTTATTCCGACTCGAACTTGATATTAAAGAAACGACAGATTCATTACG
AAACATTAACAAAAGCATTGATCAACTCGATAAATACAATTATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P060

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment