Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EQI56_RS13360 Genome accession   NZ_CP035165
Coordinates   2559591..2560358 (-) Length   255 a.a.
NCBI ID   WP_041850024.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103881     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2554591..2565358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI56_RS13340 (EQI56_13340) ppsR 2554766..2555578 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  EQI56_RS13345 (EQI56_13345) ccpN 2555604..2556242 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  EQI56_RS13350 (EQI56_13350) glyS 2556375..2558414 (-) 2040 WP_032722129.1 glycine--tRNA ligase subunit beta -
  EQI56_RS13355 (EQI56_13355) glyQ 2558407..2559294 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  EQI56_RS13360 (EQI56_13360) recO 2559591..2560358 (-) 768 WP_041850024.1 DNA repair protein RecO Machinery gene
  EQI56_RS13365 (EQI56_13365) yqzL 2560395..2560538 (-) 144 WP_003230053.1 YqzL family protein -
  EQI56_RS13370 (EQI56_13370) era 2560686..2561591 (-) 906 WP_003230051.1 GTPase Era -
  EQI56_RS13375 (EQI56_13375) - 2561572..2561982 (-) 411 WP_003230049.1 cytidine deaminase -
  EQI56_RS13380 (EQI56_13380) unpK 2562101..2562472 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  EQI56_RS13385 (EQI56_13385) ybeY 2562453..2562926 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  EQI56_RS13390 (EQI56_13390) pgpH 2562927..2565062 (-) 2136 WP_015251683.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29376.06 Da        Isoelectric Point: 8.3080

>NTDB_id=335287 EQI56_RS13360 WP_041850024.1 2559591..2560358(-) (recO) [Bacillus subtilis strain SRCM103881]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHFMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=335287 EQI56_RS13360 WP_041850024.1 2559591..2560358(-) (recO) [Bacillus subtilis strain SRCM103881]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTAGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTAAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATTTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment