Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   EQI48_RS14700 Genome accession   NZ_CP035164
Coordinates   2782825..2783571 (-) Length   248 a.a.
NCBI ID   WP_072692713.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104005     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2777825..2788571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI48_RS14670 (EQI48_14670) - 2778156..2778590 (+) 435 WP_069839654.1 helix-turn-helix transcriptional regulator -
  EQI48_RS14675 (EQI48_14675) - 2778604..2779050 (+) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  EQI48_RS14680 (EQI48_14680) - 2779081..2780517 (+) 1437 WP_164906785.1 recombinase family protein -
  EQI48_RS14685 (EQI48_14685) radC 2780536..2780937 (-) 402 Protein_2833 DNA repair protein RadC -
  EQI48_RS14690 (EQI48_14690) maf 2780974..2781543 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  EQI48_RS14695 (EQI48_14695) spoIIB 2781696..2782691 (-) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  EQI48_RS14700 (EQI48_14700) comC 2782825..2783571 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  EQI48_RS14705 (EQI48_14705) folC 2783713..2785005 (-) 1293 WP_029727116.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  EQI48_RS14710 (EQI48_14710) valS 2785065..2787707 (-) 2643 WP_128471969.1 valine--tRNA ligase -
  EQI48_RS14715 (EQI48_14715) - 2788155..2788346 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=335213 EQI48_RS14700 WP_072692713.1 2782825..2783571(-) (comC) [Bacillus subtilis strain SRCM104005]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPATELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=335213 EQI48_RS14700 WP_072692713.1 2782825..2783571(-) (comC) [Bacillus subtilis strain SRCM104005]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAACAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment