Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EQI48_RS12305 Genome accession   NZ_CP035164
Coordinates   2385474..2386277 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104005     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2380474..2391277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI48_RS12280 (EQI48_12280) glpQB 2381612..2382343 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  EQI48_RS12285 (EQI48_12285) yqiI 2382422..2383042 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  EQI48_RS12290 (EQI48_12290) - 2383062..2383358 (-) 297 WP_014480225.1 hypothetical protein -
  EQI48_RS12295 (EQI48_12295) - 2383666..2383818 (+) 153 WP_014480226.1 hypothetical protein -
  EQI48_RS12300 (EQI48_12300) yqiG 2383891..2385009 (+) 1119 WP_029726733.1 NADH-dependent flavin oxidoreductase -
  EQI48_RS12305 (EQI48_12305) spo0A 2385474..2386277 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  EQI48_RS12310 (EQI48_12310) spoIVB 2386553..2387833 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  EQI48_RS12315 (EQI48_12315) recN 2388008..2389738 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  EQI48_RS12320 (EQI48_12320) argR 2389775..2390224 (-) 450 WP_003230265.1 arginine repressor ArgR -
  EQI48_RS12325 (EQI48_12325) yqxC 2390322..2391167 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=335195 EQI48_RS12305 WP_003226427.1 2385474..2386277(-) (spo0A) [Bacillus subtilis strain SRCM104005]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=335195 EQI48_RS12305 WP_003226427.1 2385474..2386277(-) (spo0A) [Bacillus subtilis strain SRCM104005]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCTGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment