Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQI48_RS11315 Genome accession   NZ_CP035164
Coordinates   2208443..2209063 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104005     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2203443..2214063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI48_RS11275 (EQI48_11275) ptsA 2204574..2205080 (-) 507 WP_029317998.1 PTS glucose transporter subunit IIA -
  EQI48_RS11280 (EQI48_11280) ypqA 2205218..2205637 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  EQI48_RS11285 (EQI48_11285) sppG 2205658..2206035 (-) 378 WP_004398696.1 YppG family protein -
  EQI48_RS11290 (EQI48_11290) yppF 2206223..2206411 (+) 189 WP_003230690.1 YppF family protein -
  EQI48_RS11295 (EQI48_11295) yppE 2206450..2206821 (-) 372 WP_003246080.1 YppE family protein -
  EQI48_RS11300 (EQI48_11300) yppD 2206867..2207112 (-) 246 WP_004398488.1 YppD family protein -
  EQI48_RS11305 (EQI48_11305) sspM 2207311..2207415 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  EQI48_RS11310 (EQI48_11310) yppC 2207440..2208402 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  EQI48_RS11315 (EQI48_11315) recU 2208443..2209063 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  EQI48_RS11320 (EQI48_11320) ponA 2209085..2211829 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  EQI48_RS11325 (EQI48_11325) ypoC 2211905..2212399 (-) 495 WP_009967579.1 YpoC family protein -
  EQI48_RS11330 (EQI48_11330) nth 2212396..2213055 (-) 660 WP_029726782.1 endonuclease III -
  EQI48_RS11335 (EQI48_11335) dnaD 2213074..2213772 (-) 699 WP_128471800.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=335194 EQI48_RS11315 WP_004399067.1 2208443..2209063(+) (recU) [Bacillus subtilis strain SRCM104005]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=335194 EQI48_RS11315 WP_004399067.1 2208443..2209063(+) (recU) [Bacillus subtilis strain SRCM104005]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment