Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EQI48_RS07915 Genome accession   NZ_CP035164
Coordinates   1499326..1499604 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM104005     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1494326..1504604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI48_RS07895 (EQI48_07895) panEB 1495514..1496425 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  EQI48_RS07900 (EQI48_07900) ampS 1496459..1497691 (-) 1233 WP_003232341.1 aminopeptidase -
  EQI48_RS07905 (EQI48_07905) ykpC 1497800..1497934 (-) 135 WP_003238865.1 protein YkpC -
  EQI48_RS07910 (EQI48_07910) mreBH 1498035..1499042 (-) 1008 WP_029727190.1 cell shape-determining protein MreBH -
  EQI48_RS07915 (EQI48_07915) abrB 1499326..1499604 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  EQI48_RS07920 (EQI48_07920) kinC 1499794..1501080 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  EQI48_RS07925 (EQI48_07925) ykqA 1501096..1501929 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  EQI48_RS07930 (EQI48_07930) ktrC 1501992..1502657 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  EQI48_RS07935 (EQI48_07935) ade 1502813..1504546 (+) 1734 WP_080529276.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=335189 EQI48_RS07915 WP_003244728.1 1499326..1499604(+) (abrB) [Bacillus subtilis strain SRCM104005]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=335189 EQI48_RS07915 WP_003244728.1 1499326..1499604(+) (abrB) [Bacillus subtilis strain SRCM104005]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment