Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EQI27_RS11320 Genome accession   NZ_CP035163
Coordinates   2215914..2216534 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103923     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2210914..2221534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI27_RS11280 (EQI27_11280) ptsA 2212045..2212551 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  EQI27_RS11285 (EQI27_11285) ypqA 2212689..2213108 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  EQI27_RS11290 (EQI27_11290) sppG 2213129..2213506 (-) 378 WP_004398696.1 YppG family protein -
  EQI27_RS11295 (EQI27_11295) yppF 2213694..2213882 (+) 189 WP_003230690.1 YppF family protein -
  EQI27_RS11300 (EQI27_11300) yppE 2213921..2214292 (-) 372 WP_021481525.1 YppE family protein -
  EQI27_RS11305 (EQI27_11305) yppD 2214338..2214583 (-) 246 WP_041849959.1 DUF5446 family protein -
  EQI27_RS11310 (EQI27_11310) sspM 2214782..2214886 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  EQI27_RS11315 (EQI27_11315) yppC 2214911..2215873 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  EQI27_RS11320 (EQI27_11320) recU 2215914..2216534 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  EQI27_RS11325 (EQI27_11325) ponA 2216556..2219306 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  EQI27_RS11330 (EQI27_11330) ypoC 2219381..2219875 (-) 495 WP_041849962.1 YpoC family protein -
  EQI27_RS11335 (EQI27_11335) nth 2219872..2220531 (-) 660 WP_009967580.1 endonuclease III -
  EQI27_RS11340 (EQI27_11340) dnaD 2220550..2221248 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=335116 EQI27_RS11320 WP_004399067.1 2215914..2216534(+) (recU) [Bacillus subtilis strain SRCM103923]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=335116 EQI27_RS11320 WP_004399067.1 2215914..2216534(+) (recU) [Bacillus subtilis strain SRCM103923]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment