Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   SEQ_RS02985 Genome accession   NC_012471
Coordinates   589390..590427 (+) Length   345 a.a.
NCBI ID   WP_012679161.1    Uniprot ID   C0MBZ2
Organism   Streptococcus equi subsp. equi 4047     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 584390..595427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEQ_RS02960 (SEQ_0601) - 584700..586031 (+) 1332 WP_012679156.1 dipeptidase -
  SEQ_RS02965 (SEQ_0602) arcC 586049..586999 (+) 951 WP_012679157.1 carbamate kinase -
  SEQ_RS02970 (SEQ_0603) asnA 587219..588211 (+) 993 WP_012679158.1 aspartate--ammonia ligase -
  SEQ_RS02975 (SEQ_0604) rsmD 588383..588922 (+) 540 WP_012679159.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SEQ_RS02980 (SEQ_0605) coaD 588912..589412 (+) 501 WP_012679160.1 pantetheine-phosphate adenylyltransferase -
  SEQ_RS02985 (SEQ_0606) sepM 589390..590427 (+) 1038 WP_012679161.1 SepM family pheromone-processing serine protease Regulator
  SEQ_RS02990 (SEQ_0608) - 590989..591603 (+) 615 WP_012679162.1 YutD family protein -
  SEQ_RS02995 (SEQ_0609) rlmN 591607..592689 (+) 1083 WP_012679163.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SEQ_RS03005 (SEQ_0611) - 593971..594501 (+) 531 WP_012515230.1 Dps family protein -
  SEQ_RS03010 (SEQ_0612) - 594874..595107 (+) 234 WP_012515231.1 YqgQ family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37438.09 Da        Isoelectric Point: 9.4223

>NTDB_id=33511 SEQ_RS02985 WP_012679161.1 589390..590427(+) (sepM) [Streptococcus equi subsp. equi 4047]
MKTIKKIKWWLIGFVALLFLLLTLFFPLPYYIEMPGGAYDIRSVLTVNGKEDKEKGAYQFVVVSLSRATLAKLLYAWLTP
FTEISTMEDTTGGYSDADYLRINRFYMETSQNSAVYQALTLAGKEVSFDYKGVYVLDVSKDSSFKGVLHLADTVTGVNGK
TFTTSADLIDYVSHLTLGDEVQVQFTTAGESKTEKGKIIKLKNGKNGIGITLTDHTQVISGDEVDFSTGGVGGPSAGLMF
TLDIYDQINHEDLRKGRVIAGTGTIGKDGKVGDIGGAGLKVAAAAAAGADIFFVPNNPVHKDVKKANPKAISNYEEAKKA
AKRLKTAMKIIPVKTVQDAISYLKK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=33511 SEQ_RS02985 WP_012679161.1 589390..590427(+) (sepM) [Streptococcus equi subsp. equi 4047]
ATGAAAACAATAAAAAAAATTAAATGGTGGCTGATTGGCTTTGTTGCCTTGCTTTTTCTACTGTTGACACTGTTTTTCCC
CTTGCCTTATTATATTGAAATGCCAGGTGGAGCCTATGATATTCGCTCGGTATTGACTGTCAATGGCAAAGAGGATAAGG
AAAAGGGAGCTTATCAGTTTGTTGTAGTGAGCCTCAGTCGGGCCACCTTGGCTAAATTGCTCTATGCTTGGCTAACGCCT
TTCACTGAGATTAGCACCATGGAAGATACTACTGGTGGCTATAGCGATGCTGACTACCTGCGAATTAATCGCTTTTATAT
GGAAACCTCTCAAAACAGCGCTGTTTATCAGGCCCTTACTCTAGCAGGCAAGGAGGTAAGCTTTGATTATAAGGGTGTTT
ATGTCTTAGACGTCAGCAAGGATTCTAGCTTTAAAGGTGTGCTGCACCTAGCAGATACAGTGACAGGTGTCAATGGTAAA
ACATTTACAACGTCTGCCGATCTGATTGATTATGTTTCTCATTTGACCTTGGGAGATGAGGTGCAGGTACAATTTACAAC
CGCTGGTGAGTCAAAGACTGAAAAAGGAAAGATTATTAAGCTTAAAAACGGTAAAAATGGGATTGGCATTACCCTGACAG
ACCACACACAGGTCATTTCTGGTGATGAGGTCGACTTTAGCACTGGAGGTGTGGGTGGACCAAGTGCAGGCTTGATGTTT
ACTCTTGATATTTATGATCAAATCAATCACGAAGACTTGCGCAAGGGACGTGTGATTGCTGGTACAGGAACCATTGGCAA
GGATGGAAAAGTTGGAGATATTGGCGGGGCGGGCCTAAAGGTGGCTGCCGCCGCCGCTGCTGGTGCTGATATTTTCTTTG
TTCCAAATAATCCTGTGCATAAGGACGTCAAAAAAGCAAATCCTAAGGCTATTAGCAATTACGAGGAGGCTAAAAAAGCA
GCTAAACGACTAAAGACAGCAATGAAAATTATTCCTGTGAAAACCGTTCAAGATGCTATAAGCTACCTTAAAAAATAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(130-193)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0MBZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.855

100

0.699

Multiple sequence alignment