Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FYA12_RS14820 Genome accession   NZ_CP043197
Coordinates   3052678..3053193 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O16:H48 strain PG20180061     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3047678..3058193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA12_RS14775 (FYA12_14775) csrA 3048265..3048450 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FYA12_RS14805 (FYA12_14805) yqaB 3049908..3050474 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FYA12_RS14810 (FYA12_14810) yqaA 3050471..3050899 (+) 429 WP_001287454.1 YqaA family protein -
  FYA12_RS14815 (FYA12_14815) gshA 3050972..3052528 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FYA12_RS14820 (FYA12_14820) luxS 3052678..3053193 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FYA12_RS14825 (FYA12_14825) emrB 3053257..3054795 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FYA12_RS14830 (FYA12_14830) emrA 3054812..3055984 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FYA12_RS14835 (FYA12_14835) emrR 3056111..3056641 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FYA12_RS14840 (FYA12_14840) ygaH 3056732..3057067 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FYA12_RS14845 (FYA12_14845) ygaZ 3057057..3057794 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=335092 FYA12_RS14820 WP_001130211.1 3052678..3053193(+) (luxS) [Escherichia coli O16:H48 strain PG20180061]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=335092 FYA12_RS14820 WP_001130211.1 3052678..3053193(+) (luxS) [Escherichia coli O16:H48 strain PG20180061]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731