Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSN5_RS18540 Genome accession   NC_014976
Coordinates   3528411..3529547 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis BSn5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3523411..3534547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS18520 (BSn5_18165) uxaA 3523864..3525357 (+) 1494 WP_015715723.1 altronate dehydratase family protein -
  BSN5_RS18525 (BSn5_18170) yjnA 3525396..3526160 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  BSN5_RS18530 (BSn5_18175) bstD 3526382..3526846 (-) 465 WP_015715724.1 DinB family protein -
  BSN5_RS18535 (BSn5_18180) yjoB 3526995..3528266 (+) 1272 WP_015715725.1 ATPase YjoB -
  BSN5_RS18540 (BSn5_18185) rapC 3528411..3529547 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  BSN5_RS18545 (BSn5_18190) phrA 3529537..3529671 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  BSN5_RS18550 (BSn5_18195) yjpA 3529702..3529959 (-) 258 WP_003232731.1 YciI family protein -
  BSN5_RS18555 (BSn5_18200) xlyB 3530080..3531033 (+) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  BSN5_RS18560 (BSn5_18205) yjqA 3531073..3531450 (-) 378 WP_015715726.1 PH domain-containing protein -
  BSN5_RS18565 (BSn5_18210) pghB 3531556..3532158 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  BSN5_RS18570 (BSn5_18215) xpdC 3532235..3533071 (+) 837 WP_003245071.1 manganese catalase family protein -
  BSN5_RS18575 (BSn5_18220) xkdA 3533115..3533711 (-) 597 WP_015715727.1 ImmA/IrrE family metallo-endopeptidase -
  BSN5_RS18580 (BSn5_18225) xre 3533874..3534215 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=33507 BSN5_RS18540 WP_015252291.1 3528411..3529547(+) (rapC) [Bacillus subtilis BSn5]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=33507 BSN5_RS18540 WP_015252291.1 3528411..3529547(+) (rapC) [Bacillus subtilis BSn5]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTAGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418

Multiple sequence alignment