Detailed information NTG0033507

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SEQ_RS01815
• Genome accession: NC_012471
• Coordinates: 338230..339165 (+)
• Length: 311 a.a.
• NCBI ID: WP_012678999.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi 4047
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 333230..344165

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SEQ_RS01795 (SEQ_0352)	-	333390..335048 (+)	1659	WP_012678995.1	peptide ABC transporter substrate-binding protein	-
SEQ_RS01800 (SEQ_0353)	-	335217..336131 (+)	915	WP_012678996.1	ABC transporter permease	-
SEQ_RS01805 (SEQ_0354)	-	336141..337172 (+)	1032	WP_012678997.1	ABC transporter permease	-
SEQ_RS01810 (SEQ_0355)	oppD	337184..338230 (+)	1047	WP_012678998.1	ABC transporter ATP-binding protein	Regulator
SEQ_RS01815 (SEQ_0356)	amiF	338230..339165 (+)	936	WP_012678999.1	ATP-binding cassette domain-containing protein	Regulator
SEQ_RS01820 (SEQ_0357)	rnjA	339794..341476 (-)	1683	WP_012514941.1	ribonuclease J1	-
SEQ_RS01825 (SEQ_0358)	-	341478..341708 (-)	231	WP_012514942.1	DNA-dependent RNA polymerase subunit epsilon	-
SEQ_RS01830 (SEQ_0359)	tsaB	341994..342692 (+)	699	WP_012679000.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SEQ_RS01835 (SEQ_0360)	rimI	342695..343120 (+)	426	WP_012679001.1	ribosomal protein S18-alanine N-acetyltransferase	-
SEQ_RS01840 (SEQ_0361)	tsaD	343110..344126 (+)	1017	WP_012678539.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34973.12 Da
• Isoelectric Point: 8.1293

>NTDB_id=33507 SEQ_RS01815 WP_012678999.1 338230..339165(+) (amiF) [Streptococcus equi subsp. equi 4047]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQNHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAEQYRAECGL

Nucleotide

• Length: 936 bp

>NTDB_id=33507 SEQ_RS01815 WP_012678999.1 338230..339165(+) (amiF) [Streptococcus equi subsp. equi 4047]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTTTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAAGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGAACCATTTGACGCGCTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGAATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTCTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGGACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACTCAGGCCGAAGCCGAGCAGTACCGAGCAGAGTGTGGCCTTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.754	98.071	0.537
amiF	Streptococcus thermophilus LMG 18311	54.426	98.071	0.534
amiF	Streptococcus salivarius strain HSISS4	54.098	98.071	0.531