Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FYA12_RS00995 Genome accession   NZ_CP043197
Coordinates   186220..186849 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O16:H48 strain PG20180061     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 181220..191849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA12_RS00980 (FYA12_00980) helD 181462..183516 (-) 2055 WP_001295354.1 DNA helicase IV -
  FYA12_RS00985 (FYA12_00985) yccF 183639..184085 (+) 447 WP_001261235.1 YccF domain-containing protein -
  FYA12_RS00990 (FYA12_00990) yccS 184095..186257 (+) 2163 WP_000875061.1 YccS family putative transporter -
  FYA12_RS00995 (FYA12_00995) sxy/tfoX 186220..186849 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FYA12_RS01000 (FYA12_01000) sulA 187068..187577 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FYA12_RS01005 (FYA12_01005) ompA 187934..188974 (+) 1041 WP_000750416.1 porin OmpA -
  FYA12_RS01010 (FYA12_01010) matP 189050..189502 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FYA12_RS01015 (FYA12_01015) ycbZ 189688..191448 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=335035 FYA12_RS00995 WP_000839153.1 186220..186849(-) (sxy/tfoX) [Escherichia coli O16:H48 strain PG20180061]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=335035 FYA12_RS00995 WP_000839153.1 186220..186849(-) (sxy/tfoX) [Escherichia coli O16:H48 strain PG20180061]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment