Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FYA13_RS19955 Genome accession   NZ_CP043195
Coordinates   4068559..4068999 (+) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli O16:H48 strain PG20180062     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4063559..4073999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA13_RS19935 (FYA13_19935) aroP 4064557..4065930 (+) 1374 WP_000969915.1 aromatic amino acid transporter AroP -
  FYA13_RS19940 (FYA13_19940) ampE 4065973..4066827 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  FYA13_RS19945 (FYA13_19945) ampD 4066824..4067375 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FYA13_RS19950 (FYA13_19950) nadC 4067463..4068356 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FYA13_RS19955 (FYA13_19955) pilA 4068559..4068999 (+) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  FYA13_RS19960 (FYA13_19960) pilB 4069009..4070394 (+) 1386 WP_001025145.1 type II secretion system protein GspE Machinery gene
  FYA13_RS19965 (FYA13_19965) hofC 4070384..4071586 (+) 1203 WP_000157266.1 protein transport protein HofC -
  FYA13_RS19970 (FYA13_19970) guaC 4071621..4072664 (-) 1044 WP_001217338.1 GMP reductase -
  FYA13_RS23215 - 4072820..4072864 (-) 45 WP_120795372.1 protein YacM -
  FYA13_RS19975 (FYA13_19975) coaE 4072889..4073509 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=335025 FYA13_RS19955 WP_000360904.1 4068559..4068999(+) (pilA) [Escherichia coli O16:H48 strain PG20180062]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=335025 FYA13_RS19955 WP_000360904.1 4068559..4068999(+) (pilA) [Escherichia coli O16:H48 strain PG20180062]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363