Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   EQH88_RS14685 Genome accession   NZ_CP035161
Coordinates   2779496..2780248 (-) Length   250 a.a.
NCBI ID   WP_080010571.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103862     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2774496..2785248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS14660 (EQH88_14660) mreC 2774909..2775781 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  EQH88_RS14665 (EQH88_14665) mreB 2775812..2776825 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  EQH88_RS14670 (EQH88_14670) radC 2776917..2777612 (-) 696 WP_015251546.1 DNA repair protein RadC -
  EQH88_RS14675 (EQH88_14675) maf 2777649..2778218 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  EQH88_RS14680 (EQH88_14680) spoIIB 2778371..2779369 (-) 999 WP_003229644.1 stage II sporulation protein SpoIIB -
  EQH88_RS14685 (EQH88_14685) comC 2779496..2780248 (-) 753 WP_080010571.1 A24 family peptidase Machinery gene
  EQH88_RS14690 (EQH88_14690) folC 2780388..2781680 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  EQH88_RS14695 (EQH88_14695) valS 2781740..2784382 (-) 2643 WP_003229639.1 valine--tRNA ligase -
  EQH88_RS14700 (EQH88_14700) - 2784830..2785021 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26673.27 Da        Isoelectric Point: 9.4398

>NTDB_id=334977 EQH88_RS14685 WP_080010571.1 2779496..2780248(-) (comC) [Bacillus subtilis strain SRCM103862]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAMAAGSILAYLYGDSIIS
FYIKMALADC

Nucleotide


Download         Length: 753 bp        

>NTDB_id=334977 EQH88_RS14685 WP_080010571.1 2779496..2780248(-) (comC) [Bacillus subtilis strain SRCM103862]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATGGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGCTGACTGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.19

98.8

0.98

Multiple sequence alignment