Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | EQH88_RS12790 | Genome accession | NZ_CP035161 |
| Coordinates | 2458111..2459148 (-) | Length | 345 a.a. |
| NCBI ID | WP_029726718.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain SRCM103862 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2453111..2464148
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQH88_RS12740 (EQH88_12740) | tasA | 2453209..2453994 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| EQH88_RS12745 (EQH88_12745) | sipW | 2454058..2454630 (-) | 573 | WP_072692741.1 | signal peptidase I SipW | - |
| EQH88_RS12750 (EQH88_12750) | tapA | 2454614..2455375 (-) | 762 | WP_029726724.1 | amyloid fiber anchoring/assembly protein TapA | - |
| EQH88_RS12755 (EQH88_12755) | yqzG | 2455646..2455972 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| EQH88_RS12760 (EQH88_12760) | spoIITA | 2456014..2456193 (-) | 180 | WP_029726723.1 | YqzE family protein | - |
| EQH88_RS12765 (EQH88_12765) | comGG | 2456265..2456639 (-) | 375 | WP_029726722.1 | ComG operon protein ComGG | Machinery gene |
| EQH88_RS12770 (EQH88_12770) | comGF | 2456640..2457023 (-) | 384 | WP_029726721.1 | ComG operon protein ComGF | Machinery gene |
| EQH88_RS12775 (EQH88_12775) | comGE | 2457049..2457396 (-) | 348 | WP_014480255.1 | ComG operon protein 5 | Machinery gene |
| EQH88_RS12780 (EQH88_12780) | comGD | 2457380..2457811 (-) | 432 | WP_029726720.1 | comG operon protein ComGD | Machinery gene |
| EQH88_RS12785 (EQH88_12785) | comGC | 2457801..2458097 (-) | 297 | WP_029726719.1 | comG operon protein ComGC | Machinery gene |
| EQH88_RS12790 (EQH88_12790) | comGB | 2458111..2459148 (-) | 1038 | WP_029726718.1 | comG operon protein ComGB | Machinery gene |
| EQH88_RS12795 (EQH88_12795) | comGA | 2459135..2460205 (-) | 1071 | WP_004399124.1 | competence protein ComGA | Machinery gene |
| EQH88_RS12800 (EQH88_12800) | - | 2460418..2460615 (-) | 198 | WP_029726717.1 | hypothetical protein | - |
| EQH88_RS12805 (EQH88_12805) | corA | 2460617..2461570 (-) | 954 | WP_004399136.1 | magnesium transporter CorA | - |
| EQH88_RS12810 (EQH88_12810) | yqhB | 2461713..2463041 (+) | 1329 | WP_029726716.1 | hemolysin family protein | - |
| EQH88_RS12815 (EQH88_12815) | rsbRD | 2463094..2463930 (-) | 837 | WP_003230149.1 | RsbT co-antagonist protein RsbRD | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39702.10 Da Isoelectric Point: 9.6257
>NTDB_id=334967 EQH88_RS12790 WP_029726718.1 2458111..2459148(-) (comGB) [Bacillus subtilis strain SRCM103862]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDILFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDILFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=334967 EQH88_RS12790 WP_029726718.1 2458111..2459148(-) (comGB) [Bacillus subtilis strain SRCM103862]
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCGAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATACTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCGAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATACTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
99.381 |
93.623 |
0.93 |