Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EQH88_RS12540 Genome accession   NZ_CP035161
Coordinates   2418152..2418955 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103862     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2413152..2423955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS12515 (EQH88_12515) glpQB 2414299..2415030 (-) 732 WP_069703866.1 glycerophosphodiester phosphodiesterase -
  EQH88_RS12520 (EQH88_12520) yqiI 2415109..2415729 (-) 621 WP_080477816.1 N-acetylmuramoyl-L-alanine amidase -
  EQH88_RS12525 (EQH88_12525) yqiH 2415744..2416037 (-) 294 WP_003230284.1 lipoprotein -
  EQH88_RS12530 (EQH88_12530) - 2416345..2416497 (+) 153 WP_014480226.1 hypothetical protein -
  EQH88_RS12535 (EQH88_12535) yqiG 2416570..2417688 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  EQH88_RS12540 (EQH88_12540) spo0A 2418152..2418955 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  EQH88_RS12545 (EQH88_12545) spoIVB 2419231..2420511 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  EQH88_RS12550 (EQH88_12550) recN 2420685..2422415 (-) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  EQH88_RS12555 (EQH88_12555) argR 2422452..2422901 (-) 450 WP_003230265.1 arginine repressor ArgR -
  EQH88_RS12560 (EQH88_12560) yqxC 2422999..2423844 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=334958 EQH88_RS12540 WP_003226427.1 2418152..2418955(-) (spo0A) [Bacillus subtilis strain SRCM103862]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=334958 EQH88_RS12540 WP_003226427.1 2418152..2418955(-) (spo0A) [Bacillus subtilis strain SRCM103862]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment