Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   EQH88_RS08105 Genome accession   NZ_CP035161
Coordinates   1513051..1513626 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103862     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508051..1518626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS08075 (EQH88_08075) dapD 1508237..1508947 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  EQH88_RS08080 (EQH88_08080) dapI 1509017..1510141 (+) 1125 WP_021479383.1 N-acetyldiaminopimelate deacetylase -
  EQH88_RS08085 (EQH88_08085) ykuS 1510203..1510448 (+) 246 WP_003232382.1 YkuS family protein -
  EQH88_RS08090 (EQH88_08090) mscT 1510485..1511288 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  EQH88_RS08095 (EQH88_08095) ahpA 1511525..1512067 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  EQH88_RS08100 (EQH88_08100) ykuV 1512139..1512585 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  EQH88_RS08105 (EQH88_08105) rok 1513051..1513626 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  EQH88_RS08110 (EQH88_08110) cse15 1513667..1514632 (-) 966 WP_029727015.1 spore protein Cse15 -
  EQH88_RS08115 (EQH88_08115) mobA 1514769..1515368 (+) 600 WP_021479380.1 molybdenum cofactor guanylyltransferase -
  EQH88_RS08120 (EQH88_08120) moeB 1515419..1516438 (+) 1020 WP_017696813.1 molybdopterin-synthase adenylyltransferase MoeB -
  EQH88_RS08125 (EQH88_08125) glp 1516456..1517748 (+) 1293 WP_038427631.1 gephyrin-like molybdotransferase Glp -
  EQH88_RS08130 (EQH88_08130) mobB 1517709..1518230 (+) 522 WP_029725925.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=334951 EQH88_RS08105 WP_003232378.1 1513051..1513626(+) (rok) [Bacillus subtilis strain SRCM103862]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=334951 EQH88_RS08105 WP_003232378.1 1513051..1513626(+) (rok) [Bacillus subtilis strain SRCM103862]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment