Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EQH88_RS01995 Genome accession   NZ_CP035161
Coordinates   370397..370846 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain SRCM103862     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 365397..375846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS01960 (EQH88_01960) yckA 365548..366228 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  EQH88_RS01965 (EQH88_01965) yckB 366238..367101 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  EQH88_RS01970 (EQH88_01970) - 367263..367460 (+) 198 WP_119122841.1 hypothetical protein -
  EQH88_RS01975 (EQH88_01975) yckC 367479..367934 (+) 456 WP_003246356.1 RDD family protein -
  EQH88_RS01980 (EQH88_01980) yckD 368016..368348 (+) 333 WP_003246247.1 YckD family protein -
  EQH88_RS01985 (EQH88_01985) bglC 368502..369935 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  EQH88_RS01990 (EQH88_01990) nin/comJ 369972..370370 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  EQH88_RS01995 (EQH88_01995) nucA/comI 370397..370846 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  EQH88_RS02000 (EQH88_02000) tlpC 371014..372735 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  EQH88_RS02005 (EQH88_02005) hxlB 372846..373403 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  EQH88_RS02010 (EQH88_02010) hxlA 373409..374041 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  EQH88_RS02015 (EQH88_02015) hxlR 374274..374636 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=334928 EQH88_RS01995 WP_003234608.1 370397..370846(-) (nucA/comI) [Bacillus subtilis strain SRCM103862]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=334928 EQH88_RS01995 WP_003234608.1 370397..370846(-) (nucA/comI) [Bacillus subtilis strain SRCM103862]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment