Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   BSN5_RS17205 Genome accession   NC_014976
Coordinates   3276956..3279847 (+) Length   963 a.a.
NCBI ID   WP_082201820.1    Uniprot ID   -
Organism   Bacillus subtilis BSn5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3271956..3284847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS17180 (BSn5_16805) yhaR 3272370..3273137 (+) 768 WP_015715595.1 enoyl-CoA hydratase -
  BSN5_RS17185 (BSn5_16810) yhzD 3273158..3273343 (-) 186 WP_015715596.1 YhzD family protein -
  BSN5_RS17190 (BSn5_16815) yhaQ 3273470..3274366 (+) 897 WP_015715597.1 ABC transporter ATP-binding protein -
  BSN5_RS17195 (BSn5_16820) yhaP 3274359..3275618 (+) 1260 WP_003244912.1 ABC transporter permease -
  BSN5_RS17200 (BSn5_16825) yhaO 3275725..3276951 (+) 1227 WP_014479332.1 exonuclease SbcCD subunit D -
  BSN5_RS17205 (BSn5_16830) sbcE 3276956..3279847 (+) 2892 WP_082201820.1 DNA repair/recombination ATPase SbcE Machinery gene
  BSN5_RS17210 (BSn5_16835) yhaM 3279921..3280865 (+) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  BSN5_RS17215 (BSn5_16840) yhaL 3280990..3281202 (+) 213 WP_003233252.1 sporulation protein YhaL -
  BSN5_RS17220 (BSn5_16850) prsA 3281243..3282127 (-) 885 WP_015715600.1 peptidylprolyl isomerase -
  BSN5_RS21720 yhzE1 3282287..3282373 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  BSN5_RS17230 yhzE2 3282498..3282584 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  BSN5_RS21725 - 3282637..3282819 (-) 183 WP_024571667.1 hypothetical protein -
  BSN5_RS17235 (BSn5_16855) yhaJ 3282927..3283445 (-) 519 WP_015715601.1 DUF3267 domain-containing protein -
  BSN5_RS17240 (BSn5_16860) yhaI 3283653..3283994 (+) 342 WP_009966921.1 YhaI family protein -
  BSN5_RS17245 (BSn5_16865) scoC 3283991..3284602 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111028.09 Da        Isoelectric Point: 6.1610

>NTDB_id=33488 BSN5_RS17205 WP_082201820.1 3276956..3279847(+) (sbcE) [Bacillus subtilis BSn5]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLGEKRMLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKNESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDTEKAVRAASSAILEDSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLLPVNQSQ
DISISDALHTLRINIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGHPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETAKKWASIQMIKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMRGDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQDGSMLPFQLDDSFVHFDQERLKRVLHVLYDLSKGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=33488 BSN5_RS17205 WP_082201820.1 3276956..3279847(+) (sbcE) [Bacillus subtilis BSn5]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCCAATCGGACCTTTCACTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAGTATGGA
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGGGGAAAAAC
GAATGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAACCATTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACATGCAGGACAATT
TCCTGCTGACGGCCTGCATCAGCTGGAAAAAAATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAACTGGCAGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACATTTGAA
CTTGCCCGGCAAGAGCTGGAAGACACGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAGATAGCCAAAGAAA
AGATAAAGAAGCTGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTACTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAATCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAGGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCTTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGATAAACATTGAACGTGAAAAAGAAATCGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAGCTTGAGCAAGAAATACAATATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGACACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGATCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTAAAAGAAACGGCTAAAAAATGGGCCTCGATACAAATGATCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTAGAGACGGCAGGAGAATTCTTCCGCCCCCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCGTGGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACGTGTGAACAGCTGTATACAGCGATCCGATTTGCTCTGGCCGTTACGCGCCAGGATGGGTCAATGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CCAAAGGTGGTAGGCAGATTTTGTATTTTACATGTCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

98.235

100

0.982

Multiple sequence alignment