Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SZO_RS08075 Genome accession   NC_012470
Coordinates   1733337..1734062 (-) Length   241 a.a.
NCBI ID   WP_012678429.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728337..1739062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS08045 (SZO_15420) rimP 1728984..1729466 (-) 483 WP_042670147.1 ribosome maturation factor RimP -
  SZO_RS08060 (SZO_15460) trmB 1730810..1731445 (-) 636 WP_012678427.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SZO_RS08065 (SZO_15470) ccrZ 1731445..1732236 (-) 792 WP_012515084.1 cell cycle regulator CcrZ -
  SZO_RS08070 (SZO_15480) - 1732299..1733333 (-) 1035 WP_012678428.1 ABC transporter permease -
  SZO_RS08075 (SZO_15490) pptA 1733337..1734062 (-) 726 WP_012678429.1 ABC transporter ATP-binding protein Regulator
  SZO_RS08080 (SZO_15500) - 1734599..1734997 (+) 399 WP_012678430.1 hypothetical protein -
  SZO_RS08085 (SZO_15510) - 1735454..1735873 (+) 420 WP_012678431.1 HIT family protein -
  SZO_RS08090 (SZO_15520) - 1735870..1736166 (+) 297 WP_012678432.1 hypothetical protein -
  SZO_RS08095 (SZO_15530) brpA 1736336..1737598 (-) 1263 WP_012678433.1 biofilm formation/cell division transcriptional regulator BrpA -
  SZO_RS08100 (SZO_15540) - 1737599..1738126 (-) 528 WP_012678434.1 GNAT family N-acetyltransferase -
  SZO_RS08105 (SZO_15550) tsaE 1738119..1738562 (-) 444 WP_012678435.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26506.80 Da        Isoelectric Point: 4.8615

>NTDB_id=33483 SZO_RS08075 WP_012678429.1 1733337..1734062(-) (pptA) [Streptococcus equi subsp. zooepidemicus]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=33483 SZO_RS08075 WP_012678429.1 1733337..1734062(-) (pptA) [Streptococcus equi subsp. zooepidemicus]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTCGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCTT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCTTATATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTATGATATTGATGTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGCTTGACGGATAAGTTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGCTTTGTGATATTGCATCAGGGGCAGGTGCGTGCGCAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACTTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73

Multiple sequence alignment