Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSN5_RS15550 Genome accession   NC_014976
Coordinates   2962466..2963593 (-) Length   375 a.a.
NCBI ID   WP_015715458.1    Uniprot ID   -
Organism   Bacillus subtilis BSn5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957466..2968593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS15535 (BSn5_15265) dagK 2959492..2960403 (+) 912 WP_015715455.1 diacylglycerol kinase -
  BSN5_RS15540 (BSn5_15270) rlmD 2960660..2962045 (+) 1386 WP_015715456.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  BSN5_RS15545 (BSn5_15275) - 2962279..2962476 (-) 198 WP_015715457.1 hypothetical protein -
  BSN5_RS15550 (BSn5_15280) rapC 2962466..2963593 (-) 1128 WP_015715458.1 Rap family tetratricopeptide repeat protein Regulator
  BSN5_RS15555 (BSn5_15285) - 2963784..2964087 (-) 304 Protein_3019 hypothetical protein -
  BSN5_RS15560 (BSn5_15290) - 2964172..2964567 (-) 396 WP_015715460.1 immunity 22 family protein -
  BSN5_RS15565 (BSn5_15295) - 2964580..2966466 (-) 1887 WP_015715461.1 T7SS effector LXG polymorphic toxin -
  BSN5_RS15570 (BSn5_15300) - 2966678..2967694 (+) 1017 WP_015715462.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44346.10 Da        Isoelectric Point: 6.8170

>NTDB_id=33480 BSN5_RS15550 WP_015715458.1 2962466..2963593(-) (rapC) [Bacillus subtilis BSn5]
MGTISSPHVGIKINEWNRHILKFNLTDAEMLKAEIERDIDIMEEDQDLLIYYQLIAFRHQLMIDYVIPSEGNQIELSEYL
KRIEGSNRKMEKLVEYYYYFFQGMFEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKMGELTKAAK
YMEKSILQFKKSNFNNLTQAYHDLALIYFLQHKQDQAMDCFRKGVRFACKFDDNLFKIMFEGLQALFIKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=33480 BSN5_RS15550 WP_015715458.1 2962466..2963593(-) (rapC) [Bacillus subtilis BSn5]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATAAAAATTAATGAATGGAACCGGCATATTCTAAAGTTTAATCTGACAGA
TGCTGAAATGCTTAAAGCTGAGATCGAACGGGACATTGACATCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGCATTTCGCCATCAGCTTATGATTGACTATGTGATTCCATCTGAAGGAAACCAAATAGAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAGCTCGTTGAATACTACTATTACTTTTTTCAAGGAATGTTTGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAATACAATTCCTTATATTTCGGATGAAATCG
AGCGGGCGGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCACGTATCCATGCACTATTCTTCT
CAGGCGTATAACATCTATAAAACACACGACCTTTACTCAGTCCGCCGCATACAATGCCATTTTGTGATCGCAGGAAACTA
CGACGATTTAGAAAGTCATGAAAAGGCGCTCCCTCACCTTGAACAGGCACTAAAAGGCGCACGGCTTCTTGAAAGCAAAA
ACAAGCGGATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATGGGCGAATTGACGAAAGCAGCAAAA
TACATGGAGAAATCGATTCTCCAATTCAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGACCAGGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGACGATA
ATCTATTTAAAATTATGTTTGAAGGATTGCAGGCGCTGTTTATCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCAAAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.421
  rapF Bacillus subtilis subsp. subtilis str. 168

39.05

100

0.395

Multiple sequence alignment