Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   SZO_RS07370 Genome accession   NC_012470
Coordinates   1581009..1582046 (-) Length   345 a.a.
NCBI ID   WP_012678320.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576009..1587046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS07345 (SZO_14100) - 1576493..1577218 (-) 726 WP_012515226.1 ABC transporter permease -
  SZO_RS07350 (SZO_14110) - 1577222..1578100 (-) 879 WP_012678317.1 ABC transporter ATP-binding protein -
  SZO_RS07355 (SZO_14120) rlmN 1578689..1579771 (-) 1083 WP_012678318.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SZO_RS07360 (SZO_14130) - 1579775..1580389 (-) 615 WP_012678319.1 YutD family protein -
  SZO_RS07370 (SZO_14140) sepM 1581009..1582046 (-) 1038 WP_012678320.1 SepM family pheromone-processing serine protease Regulator
  SZO_RS07375 (SZO_14150) coaD 1582024..1582524 (-) 501 WP_012678321.1 pantetheine-phosphate adenylyltransferase -
  SZO_RS07380 (SZO_14160) rsmD 1582514..1583053 (-) 540 WP_012678322.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SZO_RS07385 (SZO_14170) - 1583227..1584948 (-) 1722 WP_012677262.1 IS1634-like element ISSeq4 family transposase -
  SZO_RS07390 (SZO_14180) asnA 1585228..1586220 (-) 993 WP_012515219.1 aspartate--ammonia ligase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37472.10 Da        Isoelectric Point: 9.4223

>NTDB_id=33480 SZO_RS07370 WP_012678320.1 1581009..1582046(-) (sepM) [Streptococcus equi subsp. zooepidemicus]
MKTIKKFKWWLIGFVALLFLLLTLFFPLPYYIEMPGGAYDIRSVLTVNGKEDKEKGAYQFVVVSLSRATLAKLLYAWLTP
FTEISTMEDTTGGYSDADYLRINRFYMETSQNSAVYQALTLAGKEVSFDYKGVYVLDVSKDSSFKGVLHLADTVTGVNGK
TFTTSADLIDYVSHLTLGDEVQVQFTTAGESKTEKGKIIKLKNGKNGIGITLTDHTQVISGDEVDFSTGGVGGPSAGLMF
TLDIYDQINHEDLRKGRVIAGTGTIGKDGKVGDIGGAGLKVAAAAAAGADIFFVPNNPVHKDVKKANPKAISNYEEAKKA
AKRLKTAMKIIPVKTVQDAISYLKK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=33480 SZO_RS07370 WP_012678320.1 1581009..1582046(-) (sepM) [Streptococcus equi subsp. zooepidemicus]
ATGAAAACAATAAAAAAATTTAAATGGTGGCTGATTGGCTTTGTTGCCTTGCTTTTTCTACTGTTGACACTGTTTTTCCC
CTTGCCTTATTATATTGAAATGCCAGGTGGAGCCTATGATATTCGCTCGGTATTGACTGTCAATGGCAAAGAGGATAAGG
AAAAGGGAGCTTATCAGTTTGTTGTAGTGAGCCTCAGTCGGGCCACCTTGGCTAAATTGCTCTATGCTTGGCTAACGCCT
TTCACTGAGATTAGCACCATGGAAGATACTACTGGTGGCTATAGCGATGCTGACTACCTGCGAATTAATCGCTTTTATAT
GGAAACCTCTCAAAACAGCGCTGTTTATCAGGCCCTTACTCTAGCAGGCAAGGAGGTAAGCTTTGATTATAAGGGTGTTT
ATGTCTTAGACGTCAGCAAGGATTCTAGCTTTAAAGGTGTGCTGCACCTAGCAGATACAGTGACAGGTGTCAATGGTAAA
ACATTTACAACGTCTGCCGATCTGATTGATTATGTTTCTCATTTGACCTTGGGAGATGAGGTGCAGGTACAATTTACAAC
CGCTGGTGAGTCAAAGACTGAAAAAGGAAAGATTATTAAGCTTAAAAACGGTAAAAATGGGATTGGCATTACCCTGACAG
ACCACACACAGGTCATTTCTGGTGATGAGGTCGACTTTAGCACCGGAGGTGTGGGTGGACCAAGTGCAGGCTTGATGTTT
ACTCTTGATATTTATGATCAAATCAATCACGAAGACTTGCGCAAGGGACGTGTGATTGCTGGTACAGGAACCATTGGCAA
GGATGGAAAAGTTGGAGATATTGGCGGGGCGGGCCTAAAGGTGGCTGCCGCCGCCGCTGCTGGTGCTGATATTTTCTTTG
TTCCAAATAATCCTGTGCATAAGGACGTCAAAAAAGCAAATCCTAAGGCTATTAGCAATTACGAGGAGGCTAAAAAAGCA
GCTAAACGACTAAAGACAGCAATGAAAATTATTCCTGTGAAAACCGTTCAAGATGCTATAAGCTACCTTAAAAAATAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(130-193)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

70.145

100

0.701

Multiple sequence alignment