Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SZO_RS06960 Genome accession   NC_012470
Coordinates   1494428..1496230 (-) Length   600 a.a.
NCBI ID   WP_012678254.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489428..1501230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS06935 (SZO_13310) prsA 1490536..1491537 (-) 1002 WP_012678249.1 peptidylprolyl isomerase PrsA -
  SZO_RS06940 (SZO_13320) - 1491600..1492307 (-) 708 WP_012678250.1 O-methyltransferase -
  SZO_RS06945 (SZO_13330) - 1492390..1493028 (-) 639 WP_012678251.1 HAD family hydrolase -
  SZO_RS06950 (SZO_13340) - 1493079..1493711 (-) 633 WP_012678252.1 HAD-IA family hydrolase -
  SZO_RS06955 (SZO_13350) - 1493701..1494258 (-) 558 WP_012678253.1 GNAT family N-acetyltransferase -
  SZO_RS06960 (SZO_13360) pepF 1494428..1496230 (-) 1803 WP_012678254.1 oligoendopeptidase F Regulator
  SZO_RS06965 (SZO_13370) - 1496220..1497197 (-) 978 WP_012678255.1 competence protein CoiA -
  SZO_RS06970 (SZO_13380) - 1497289..1498005 (-) 717 WP_012515300.1 pseudouridine synthase -
  SZO_RS06975 (SZO_13390) - 1498177..1498881 (-) 705 WP_012678256.1 glucosamine-6-phosphate deaminase -
  SZO_RS06980 (SZO_13400) queA 1499149..1500177 (+) 1029 WP_012678257.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69092.96 Da        Isoelectric Point: 4.6865

>NTDB_id=33477 SZO_RS06960 WP_012678254.1 1494428..1496230(-) (pepF) [Streptococcus equi subsp. zooepidemicus]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAVIEAARQQAGHLLDSSSSLLNITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMALSQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRKVRRAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLHEVQDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNKLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=33477 SZO_RS06960 WP_012678254.1 1494428..1496230(-) (pepF) [Streptococcus equi subsp. zooepidemicus]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTATACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
GACAGAAGCAGATAGCCTGTCAGCAGTTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGCAGCAGTC
TCTTAAATATCACAGAGCTGCAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCGAAGTATCAGGAATATCAGGCTAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTTTC
TTTTTATGAGCCAGAGTTTATGGCCTTGAGTCAAGAGACCTATCAGGCCTTCTTAGCGGAGAAGCCAGAATTAGCAGTCT
ATGACCATTTCTTTGATAAATTGTTCAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTCGATAATGCCGATATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCTTGATGGAATCTAAAGACCGCAAGGTGCGTAGGGCGG
CCTATGAGGCGATGTACAGCACCTATGAGCAATTCCAGCATACCTACGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATCCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTGCCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGTT
TAGATGATCTAAAGATGTATGATGTTTATACTCCTTTATCTGAGACAGATCTTGCTATCGGCTATGATGAGGCCTTGGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGCCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAGGACACGCTTGATAACCTCTATACGCTAGTGCATGAGACAGGCCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCTTAGCTGAGATTGCTTCAACCACTAATGAAAATATCATGACTGAGGC
CTTGTTACATGAGGTGCAGGATGATAAGGAGCGCTTTGCTATTTTGAATCATTACCTAGATGGTTTTCGCGGAACGGTTT
TTCGTCAGACACAGTTTGCTGAGTTTGAGCACGCTATTCATCAGGCAGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAAGCTATATGCTGATTTAAATGAAAAGTATTATGGATTAAAGAAAGAGGACAACCACTTTATCCAGTATGAGTG
GGCTCGTATTCCACACTTCTATTACAACTACTATGTCTATCAATATGCAACAGGCTTTGCTGCAGCCAGCTACTTGGCTG
ATAAGATTGTGCATGGTACTCAAGAGGATATTGATCACTACTTGACTTATCTGAAGTCTGGAAATTCAGATTATCCTCTT
GAGGTGATTGCCAAGGCTGGTGTTGATATGGCTAAGGGGGATTACCTAGAAGCAGCCTTTAAGGTCTTTGAAGAGCGCTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCACATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73.167

100

0.732

Multiple sequence alignment