Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BSN5_RS14005 Genome accession   NC_014976
Coordinates   2690512..2690946 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis BSn5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2685512..2695946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS13975 (BSn5_13710) ydaD 2686160..2687020 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  BSN5_RS13980 (BSn5_13715) lyxE 2687036..2687539 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  BSN5_RS13985 (BSn5_13720) ydaF 2687626..2688177 (+) 552 WP_015715257.1 GNAT family protein -
  BSN5_RS13990 (BSn5_13725) ydaG 2688255..2688677 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  BSN5_RS13995 (BSn5_13730) amj 2689183..2689992 (+) 810 WP_015715258.1 lipid II flippase Amj -
  BSN5_RS14000 (BSn5_13735) ydzA 2690037..2690327 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  BSN5_RS14005 (BSn5_13740) lrpC 2690512..2690946 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  BSN5_RS14010 (BSn5_13745) topB 2691011..2693194 (+) 2184 WP_015715259.1 DNA topoisomerase III -
  BSN5_RS14015 (BSn5_13750) ephJ 2693397..2694485 (+) 1089 WP_015715260.1 hypothetical protein -
  BSN5_RS14020 (BSn5_13755) epsK 2694466..2695317 (+) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=33477 BSN5_RS14005 WP_003246585.1 2690512..2690946(+) (lrpC) [Bacillus subtilis BSn5]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=33477 BSN5_RS14005 WP_003246585.1 2690512..2690946(+) (lrpC) [Bacillus subtilis BSn5]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment