Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EQH94_RS06075 Genome accession   NZ_CP035131
Coordinates   1224008..1225819 (+) Length   603 a.a.
NCBI ID   WP_085439415.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain SRCM103311     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1219008..1230819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH94_RS06045 (EQH94_06045) - 1219243..1219986 (+) 744 WP_003644623.1 MBL fold metallo-hydrolase -
  EQH94_RS06050 (EQH94_06050) spxA 1220273..1220671 (+) 399 WP_011101690.1 transcriptional regulator SpxA -
  EQH94_RS06055 (EQH94_06055) - 1220807..1221538 (+) 732 WP_085439416.1 adaptor protein MecA -
  EQH94_RS06060 (EQH94_06060) - 1221723..1222274 (+) 552 WP_262335837.1 competence protein CoiA family protein -
  EQH94_RS06065 (EQH94_06065) - 1222345..1223343 (+) 999 WP_012778296.1 IS30 family transposase -
  EQH94_RS06070 (EQH94_06070) - 1223340..1223930 (+) 591 WP_262335838.1 hypothetical protein -
  EQH94_RS06075 (EQH94_06075) pepF 1224008..1225819 (+) 1812 WP_085439415.1 oligoendopeptidase F Regulator
  EQH94_RS06080 (EQH94_06080) - 1226034..1226669 (-) 636 WP_003640880.1 DsbA family protein -
  EQH94_RS06085 (EQH94_06085) - 1226962..1227624 (+) 663 WP_003640879.1 GTP pyrophosphokinase family protein -
  EQH94_RS06090 (EQH94_06090) - 1227621..1228424 (+) 804 WP_003640878.1 NAD kinase -
  EQH94_RS06095 (EQH94_06095) - 1228421..1229323 (+) 903 WP_085439414.1 RluA family pseudouridine synthase -
  EQH94_RS06100 (EQH94_06100) - 1229577..1230215 (-) 639 WP_003644620.1 copper homeostasis protein CutC -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67706.74 Da        Isoelectric Point: 4.8823

>NTDB_id=334730 EQH94_RS06075 WP_085439415.1 1224008..1225819(+) (pepF) [Lactiplantibacillus plantarum strain SRCM103311]
MVATKQLPTRSAVPEELTWDLTPIYADQAAYEADIAQVKAAIPTVTALKETFTSSADTVLAGIQAVLALYRRLEKVAVYA
SLKSDQDTGNSTNAALNDQASSLTAKVSAATAWFEPAILELTPGELDTYLDENVDLRDYRHLLDTIRLQKGHVLSESEEA
LLAGASDIFGASAKTFGVLNNADFQFPTVKDDDGNPVKLSQGIYGVLLESVHPAVRREAFEALYKVYGQFRRTLASTLAS
QVKVHNFVAQAHHYPDARTAALAANQIPTAVYDSLVTSVDKHLDLLHRYVALRKQLLGVDQLHMYDMYTPLAPKPTTNYS
YQQAQATALQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWLHEQDQEGQ
ALTADRLSKHYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTQQTDAVADYLGYLKAG
SSAFPIDVMHRAGVDMTKPDYLDAAFEVFEERLNEFEQLVTQD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=334730 EQH94_RS06075 WP_085439415.1 1224008..1225819(+) (pepF) [Lactiplantibacillus plantarum strain SRCM103311]
ATGGTAGCAACCAAACAATTGCCGACCCGTTCGGCCGTTCCTGAAGAACTGACGTGGGATTTGACGCCCATTTATGCAGA
TCAGGCCGCGTATGAGGCGGATATTGCACAAGTCAAAGCTGCAATCCCCACCGTCACTGCGCTTAAAGAAACGTTTACAA
GCTCGGCCGACACGGTGCTGGCTGGCATCCAGGCTGTTTTAGCGCTGTATCGTCGGTTAGAGAAAGTGGCGGTATACGCA
AGTCTGAAAAGTGACCAGGATACTGGCAATAGTACCAATGCGGCTTTAAACGATCAAGCTAGTAGTTTGACTGCCAAGGT
ATCCGCAGCGACTGCCTGGTTCGAACCAGCAATCTTGGAATTAACGCCGGGCGAATTGGATACGTACCTTGATGAAAACG
TCGATTTACGTGATTATCGGCATTTGTTGGATACGATCCGGTTGCAAAAGGGACACGTTCTGTCTGAAAGCGAAGAAGCT
TTACTCGCAGGCGCTAGTGATATTTTTGGTGCTTCTGCGAAAACTTTTGGTGTACTGAATAACGCTGACTTTCAATTTCC
AACGGTAAAGGATGACGACGGCAACCCTGTCAAATTGTCACAAGGAATTTATGGGGTGTTACTTGAGTCCGTTCATCCGG
CTGTTCGGCGAGAGGCGTTTGAAGCACTGTATAAAGTATACGGCCAGTTCCGGCGAACACTTGCTTCGACTTTAGCTAGC
CAAGTCAAGGTACACAATTTTGTTGCCCAGGCTCATCATTATCCAGATGCGCGGACGGCAGCACTTGCTGCCAATCAGAT
TCCGACGGCGGTTTACGATTCTTTAGTCACGTCCGTTGACAAGCATTTGGACTTATTGCACCGGTATGTTGCGTTACGGA
AACAACTGCTCGGAGTTGATCAGTTGCATATGTATGATATGTACACGCCATTGGCACCCAAGCCGACGACCAACTATTCC
TACCAGCAGGCTCAAGCAACTGCTTTACAAGCGCTCAAAATTTTGGGTCCTGATTATCTCAAACACGTCAAAACAGCGTT
TGCTTCACGGTGGATTGATGTGGTGGAAAATCAAGGCAAACGTAGCGGGGCGTATTCGTCAGGAATGTATGATACCGCGC
CATACATGCTGTTGAACTGGCAGGATAATATTGATAATTTATATACGTTGGTGCACGAAATGGGACACAGTATGCACTCT
TACTTCACGACACATCATCAGCCTTATCAGTATGGTGACTATTCAATTTTCGTGGCGGAAATTGCTTCAACGACTAATGA
AAACTTGTTGACGAACTATTTCTTAGCGACTGAACAAGATCCAAAAATGCGGGCGTATGTCTTGAATTACTACTTAGATG
GATTTAAAGGCACCGTTTTCCGGCAGACGCAATTTGCTGAGTTTGAACAGTGGCTTCATGAGCAAGATCAAGAAGGTCAG
GCTTTGACTGCCGATCGCTTGTCAAAACATTATTTGCAGTTGAACCAACGCTACTATGGTGACGCCGTCGTCAGTGATCC
GCAAATTGCCGACGAATGGTCCCGTATCCCGCATTTTTATTACAATTATTATGTTTATCAGTATGCCACGGGTTTTGCAG
CGGCCTCAACGTTGGCTGACCGTATTAGTACGCAACAGACAGATGCTGTTGCGGATTATCTCGGTTACTTGAAAGCTGGT
TCATCTGCTTTCCCAATCGATGTCATGCACCGAGCTGGAGTTGATATGACCAAGCCTGATTATCTTGATGCAGCTTTCGA
GGTATTTGAAGAACGATTAAATGAATTTGAACAGTTGGTCACCCAAGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

98.507

0.507

Multiple sequence alignment