Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   EQK21_RS10275 Genome accession   NZ_CP035110
Coordinates   234892..235599 (-) Length   235 a.a.
NCBI ID   WP_128530163.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM103465     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 229892..240599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK21_RS01140 (EQK21_01140) rpoC 231175..234819 (+) 3645 WP_128530162.1 DNA-directed RNA polymerase subunit beta' -
  EQK21_RS10275 (EQK21_01145) comC 234892..235599 (-) 708 WP_128530163.1 A24 family peptidase Machinery gene
  EQK21_RS01150 (EQK21_01150) rpsL 235870..236283 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  EQK21_RS01155 (EQK21_01155) rpsG 236373..236843 (+) 471 WP_004270185.1 30S ribosomal protein S7 -
  EQK21_RS01160 (EQK21_01160) fusA 236935..239022 (+) 2088 WP_004270213.1 elongation factor G -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26491.84 Da        Isoelectric Point: 6.9088

>NTDB_id=334614 EQK21_RS10275 WP_128530163.1 234892..235599(-) (comC) [Latilactobacillus curvatus strain SRCM103465]
MTRLLIYFLTFVIGACCASFLTVCAWRWPLGLSITWPGSRCDFCHHALAWYDLCPIISYLILRGHCRYCDTRIQHHFFTS
EVIGGLLACCLASQYFTPQIGYLLLILYLLSLVDIFHTALYPVPMVLAFMPLFIDYWPTNHWLSALLIGSTLSVINYFSG
GIGTGDIELLTILGLWFGLEVTLSMLLIACLLCLIKYLIDSLRHPVVLALVGHCPIPFVPYISYGVLIVLFIVNT

Nucleotide


Download         Length: 708 bp        

>NTDB_id=334614 EQK21_RS10275 WP_128530163.1 234892..235599(-) (comC) [Latilactobacillus curvatus strain SRCM103465]
ATGACACGTTTGTTAATATATTTTTTAACCTTTGTTATTGGCGCGTGTTGCGCCTCTTTTTTAACCGTTTGCGCTTGGCG
TTGGCCACTTGGTTTATCCATCACATGGCCTGGTTCACGGTGCGACTTCTGCCATCACGCCCTCGCTTGGTACGACTTAT
GTCCAATTATCAGTTACCTCATTCTCAGAGGGCACTGCCGCTATTGTGATACTCGAATCCAGCACCATTTTTTTACTAGT
GAGGTTATTGGCGGCTTGTTAGCGTGTTGCTTAGCCAGTCAATATTTCACACCACAGATTGGCTATTTATTGCTTATCCT
TTACTTGTTGAGCCTAGTCGATATTTTCCATACAGCTCTATACCCAGTTCCAATGGTACTGGCTTTTATGCCTTTGTTTA
TTGACTACTGGCCGACAAACCATTGGCTCAGTGCCCTATTGATTGGCAGCACCTTATCTGTCATCAACTACTTTTCAGGT
GGCATCGGTACTGGTGACATTGAATTATTGACAATTCTTGGGTTGTGGTTTGGATTGGAGGTCACCCTATCCATGTTATT
AATTGCCTGTCTCCTCTGTTTAATCAAATATCTCATCGATAGTCTCCGCCATCCAGTTGTCCTCGCCTTAGTCGGACACT
GCCCAATTCCATTTGTCCCGTATATCAGCTACGGTGTCTTAATCGTTTTGTTTATTGTAAACACATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

50.661

96.596

0.489

Multiple sequence alignment