Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BSN5_RS11955 Genome accession   NC_014976
Coordinates   2275886..2276116 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis BSn5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2270886..2281116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS11920 (BSn5_11810) ridA 2271050..2271427 (+) 378 WP_015715103.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BSN5_RS11925 (BSn5_11815) spoVG 2271622..2271915 (+) 294 WP_003218346.1 septation regulator SpoVG -
  BSN5_RS11935 (BSn5_11820) glmU 2272108..2273478 (+) 1371 WP_015715104.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BSN5_RS11940 (BSn5_11825) prsS 2273501..2274454 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  BSN5_RS11945 (BSn5_11830) rplYB 2274539..2275153 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  BSN5_RS11950 (BSn5_11835) pth 2275260..2275826 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  BSN5_RS11955 (BSn5_11840) subA/fin 2275886..2276116 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  BSN5_RS11960 (BSn5_11845) mfd 2276186..2279719 (+) 3534 WP_015715105.1 transcription-repair coupling factor -
  BSN5_RS11965 (BSn5_11850) spoVT 2279855..2280391 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=33460 BSN5_RS11955 WP_003243417.1 2275886..2276116(+) (subA/fin) [Bacillus subtilis BSn5]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=33460 BSN5_RS11955 WP_003243417.1 2275886..2276116(+) (subA/fin) [Bacillus subtilis BSn5]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment