Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   SZO_RS02310 Genome accession   NC_012470
Coordinates   478031..479353 (+) Length   440 a.a.
NCBI ID   WP_012677501.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473031..484353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SZO_RS02285 (SZO_04120) - 473463..474104 (+) 642 WP_012677497.1 response regulator transcription factor -
  SZO_RS02290 (SZO_04130) - 474138..475538 (+) 1401 WP_041790332.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SZO_RS02295 (SZO_04140) - 475538..475900 (+) 363 WP_012516140.1 S1 RNA-binding domain-containing protein -
  SZO_RS02300 (SZO_04150) cysK 476287..477213 (-) 927 WP_012677499.1 cysteine synthase A -
  SZO_RS02305 (SZO_04160) - 477334..477975 (-) 642 WP_012677500.1 YigZ family protein -
  SZO_RS02310 (SZO_04170) comFA/cflA 478031..479353 (+) 1323 WP_012677501.1 DEAD/DEAH box helicase Machinery gene
  SZO_RS02315 (SZO_04180) - 479328..479993 (+) 666 WP_012677502.1 ComF family protein -
  SZO_RS02320 (SZO_04190) hpf 480069..480617 (+) 549 WP_012677503.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 49961.18 Da        Isoelectric Point: 9.7389

>NTDB_id=33459 SZO_RS02310 WP_012677501.1 478031..479353(+) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus]
MENIENYYGRLLPERQCPKAVSVWACSLQSMIAKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
APFPKAHYLRWQVQLTTYQGAVSHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVDKGGWVCIASPRVDVCIELEKR
LSRDFSCQVCLMHAESEAYHRSPIIIATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
KDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAINRGKLPRRFITLVKKQRATGYPLLIFFPLIELAEQCCQL
LQKYFPKETIAYASSQSSNRMAIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQISGRVGRSLAR
PEGQVLFFHDGISKAMLKAVREIKDMNQKGYQNELSTLSQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=33459 SZO_RS02310 WP_012677501.1 478031..479353(+) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAAGGCAATGCCCGAAGGCTGTTTCTGTCTGGGCTTGTAG
CTTACAAAGCATGATCGCTAAAAAAGGAACATTATACTGCCAACGCTGTAGCAGCTTAATTGAGAAAGCTCATCAGCTAC
CTAGCGGTGCTTACTATTGTAGAGCCTGTCTCGTTTTTGGTCGAAACCAATCTGATCGGCCCTTGCTCTATTTTCCACCG
GCTCCTTTTCCAAAGGCACATTATCTGAGGTGGCAAGTACAGCTCACAACATATCAGGGAGCTGTCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACACTGGTTCATGCCGTTACCGGCGCTGGTAAAACAGAGATGATGTATGAAGCCA
TTGCAGCAGTTGTTGATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTCTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCCTGTCAGGTCTGTCTTATGCATGCTGAGTCAGAGGCTTATCATAGAAGTCCCATAATCATTGC
CACAACACATCAATTGATGACCTTTTACCATGCTTTTGATCTGCTCATTATTGACGAAGTAGATGCCTTTCCCTTTGTCA
ATAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AAAGATTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACATTGGCAAGAAGATTTCATGGCAAGCCCTTAGT
TGTTCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCAATCGCGGGAAATTGCCTAGAAGGTTCATCACCCTAG
TCAAAAAACAAAGGGCAACTGGCTATCCTCTCTTAATCTTTTTTCCGCTTATTGAGCTGGCTGAGCAATGCTGTCAGCTG
CTGCAAAAGTATTTTCCTAAGGAAACTATTGCTTATGCTTCCAGTCAGTCATCAAATCGAATGGCTATCATTGAGCAATT
TAGACAAGGACAAATCACTATACTCATATCAACAACCATTTTAGAAAGAGGTGTGACCTTTCCGACCGTAGATGTCTTTG
TTTTGTTAGCCAATCATCGTCTTTACACAAGCAGCAGTCTGATTCAGATTTCAGGTCGCGTCGGGCGTTCCTTGGCAAGG
CCTGAAGGACAGGTGCTGTTTTTTCATGATGGCATTAGCAAGGCCATGCTCAAGGCAGTGCGGGAGATAAAGGACATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGTCACAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(288-396)

DEAD/DEAH box helicase (DEAD)

(112-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae R6

52.235

96.591

0.505
  comFA/cflA Streptococcus pneumoniae Rx1

52.235

96.591

0.505
  comFA/cflA Streptococcus pneumoniae D39

52.235

96.591

0.505
  comFA/cflA Streptococcus pneumoniae TIGR4

52.235

96.591

0.505
  comFA/cflA Streptococcus mitis SK321

52.235

96.591

0.505
  comFA/cflA Streptococcus mitis NCTC 12261

52

96.591

0.502
  comFA Lactococcus lactis subsp. cremoris KW2

47.449

89.091

0.423

Multiple sequence alignment