Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FYA18_RS07535 Genome accession   NZ_CP043185
Coordinates   1540824..1541339 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O16:H48 strain PG20180171     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535824..1546339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA18_RS07510 (FYA18_07510) ygaZ 1536223..1536960 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  FYA18_RS07515 (FYA18_07515) ygaH 1536950..1537285 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FYA18_RS07520 (FYA18_07520) emrR 1537376..1537906 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FYA18_RS07525 (FYA18_07525) emrA 1538033..1539205 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FYA18_RS07530 (FYA18_07530) emrB 1539222..1540760 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FYA18_RS07535 (FYA18_07535) luxS 1540824..1541339 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FYA18_RS07540 (FYA18_07540) gshA 1541489..1543045 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FYA18_RS07545 (FYA18_07545) yqaA 1543118..1543546 (-) 429 WP_001287454.1 YqaA family protein -
  FYA18_RS07550 (FYA18_07550) yqaB 1543543..1544109 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FYA18_RS07580 (FYA18_07580) csrA 1545566..1545751 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=334572 FYA18_RS07535 WP_001130211.1 1540824..1541339(-) (luxS) [Escherichia coli O16:H48 strain PG20180171]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=334572 FYA18_RS07535 WP_001130211.1 1540824..1541339(-) (luxS) [Escherichia coli O16:H48 strain PG20180171]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731