Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   EM806_RS00010 Genome accession   NZ_CP035106
Coordinates   1588..3021 (+) Length   477 a.a.
NCBI ID   WP_128479162.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs3     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM806_RS00005 dnaA 1..1368 (+) 1368 WP_128479161.1 chromosomal replication initiator protein DnaA -
  EM806_RS00010 comH 1588..3021 (+) 1434 WP_128479162.1 competence protein Machinery gene
  EM806_RS00020 - 3199..3951 (+) 753 WP_128479164.1 exodeoxyribonuclease III -
  EM806_RS00025 - 3948..4583 (-) 636 WP_057112702.1 outer membrane protein -
  EM806_RS00030 - 4587..4940 (-) 354 WP_000837005.1 hypothetical protein -
  EM806_RS00035 recG 5022..6887 (+) 1866 WP_128479166.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54650.53 Da        Isoelectric Point: 6.9524

>NTDB_id=334490 EM806_RS00010 WP_128479162.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpbs3]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESQQMPSLNAPIQKPQNKPTSSQQSLQNFPYTESKLGSKNPKNSLLQPLST
PNKTSSANEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNTPNANINEHNESNENRDSVEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=334490 EM806_RS00010 WP_128479162.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpbs3]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAATACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCAACAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAGCAAT
CTCTTCAAAACTTTCCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTATCCACT
CCTAATAAAACAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTATAGCGCCACCCACTGAAAAAACACTCCCTAACAACACCCCTAACGCTAATATTAATGAAC
ACAATGAAAGCAATGAAAATAGGGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGACTACAGTAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGTATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAA
GCACGCCTTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.858

100

0.922

Multiple sequence alignment