Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   EM803_RS00010 Genome accession   NZ_CP035105
Coordinates   1670..3022 (+) Length   450 a.a.
NCBI ID   WP_240671633.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs2     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM803_RS00005 dnaA 1..1368 (+) 1368 WP_128480868.1 chromosomal replication initiator protein DnaA -
  EM803_RS00010 comH 1670..3022 (+) 1353 WP_240671633.1 competence protein Machinery gene
  EM803_RS00020 - 3200..3952 (+) 753 WP_000767536.1 exodeoxyribonuclease III -
  EM803_RS00025 - 3949..4584 (-) 636 WP_128480869.1 outer membrane protein -
  EM803_RS00030 - 4588..4941 (-) 354 WP_000837005.1 hypothetical protein -
  EM803_RS00035 recG 5023..6888 (+) 1866 WP_128480870.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 51663.01 Da        Isoelectric Point: 7.7337

>NTDB_id=334469 EM803_RS00010 WP_240671633.1 1670..3022(+) (comH) [Helicobacter pylori strain Hpbs2]
MKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDEKLSLETILNPNRPTIPRNTQIVFSSKE
LKEPHPHQMPSLNAPIQKPQNKPTSSQQSPQNFSYSESKLGSKNPKNSLLQPLATPSKISSANEVKTPTNDTKPPLRHSS
EDQENNLFVTPPTEKTLPNNNANINEHNESNENRDSVEKQAIRDPNVKEFACGKWVYDDENLQAYRPSILKRIDEYKQTA
TDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQ
AWESEYQITTQLMKAVYERPKQDDQIEPTFYETSELAYSSTRKSEITHNELNLNEKFMEFVEVYEGHYLNDIVKESSEYK
EWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=334469 EM803_RS00010 WP_240671633.1 1670..3022(+) (comH) [Helicobacter pylori strain Hpbs2]
ATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGTGTTTA
TAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAAA
AACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGAG
TTGAAAGAACCACACCCACACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCA
ACAATCTCCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTAG
CCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAGGCATTCTTCA
GAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACAACGCTAATATTAACGAACA
CAATGAAAGCAATGAAAATAGGGATAGTGTGGAAAAACAAGCCATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGGA
AGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAATACAAACAGACTGCG
ACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCTTATACTAAAATCTCTGT
TCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCTAGAAGCTCTA
CAGAAAAATGTAAAAGAGCCAGAGCACGAAAAGACGGCACGACTAGACAATGCTATCTCATAGAAGAGCCTTTAAAACAA
GCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAATGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAATAGA
GCCGACTTTCTATGAAACTAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAATGAATTGAATTTGA
ATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAAA
GAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAAG
CACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTACTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.372

100

0.918

Multiple sequence alignment