Detailed information NTG0334402

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FYA20_RS06450
• Genome accession: NZ_CP043181
• Coordinates: 1327835..1328827 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O2:H6 strain PG20180057
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1322835..1333827

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYA20_RS06430 (FYA20_06430)	ygbM	1323473..1324249 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
FYA20_RS06435 (FYA20_06435)	ygbN	1324338..1325702 (+)	1365	WP_000104433.1	GntP family transporter	-
FYA20_RS06440 (FYA20_06440)	-	1325845..1326888 (-)	1044	WP_001161577.1	MBL fold metallo-hydrolase	-
FYA20_RS06445 (FYA20_06445)	-	1327113..1327664 (+)	552	WP_001179443.1	flavodoxin family protein	-
FYA20_RS06450 (FYA20_06450)	rpoS	1327835..1328827 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FYA20_RS06455 (FYA20_06455)	nlpD	1328890..1329984 (-)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
FYA20_RS06460 (FYA20_06460)	pcm	1330169..1330795 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FYA20_RS06465 (FYA20_06465)	surE	1330789..1331550 (-)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
FYA20_RS06470 (FYA20_06470)	truD	1331531..1332580 (-)	1050	WP_148885881.1	tRNA pseudouridine(13) synthase TruD	-
FYA20_RS06475 (FYA20_06475)	ispF	1332577..1333056 (-)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FYA20_RS06480 (FYA20_06480)	ispD	1333056..1333766 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=334402 FYA20_RS06450 WP_000081550.1 1327835..1328827(-) (rpoS) [Escherichia coli O2:H6 strain PG20180057]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=334402 FYA20_RS06450 WP_000081550.1 1327835..1328827(-) (rpoS) [Escherichia coli O2:H6 strain PG20180057]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715