Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FYA20_RS06160 Genome accession   NZ_CP043181
Coordinates   1273290..1273805 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli O2:H6 strain PG20180057     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268290..1278805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA20_RS06140 (FYA20_06140) emrA 1268438..1269610 (+) 1173 WP_148885876.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FYA20_RS06145 (FYA20_06145) emrB 1269627..1271165 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  FYA20_RS06150 (FYA20_06150) - 1271423..1272130 (+) 708 WP_001097131.1 RNA ligase family protein -
  FYA20_RS06155 (FYA20_06155) - 1272127..1273239 (+) 1113 WP_000638134.1 ATP-binding protein -
  FYA20_RS06160 (FYA20_06160) luxS 1273290..1273805 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  FYA20_RS06165 (FYA20_06165) gshA 1273955..1275511 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FYA20_RS06170 (FYA20_06170) yqaA 1275584..1276012 (-) 429 WP_001287462.1 YqaA family protein -
  FYA20_RS06175 (FYA20_06175) yqaB 1276009..1276575 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FYA20_RS06205 (FYA20_06205) csrA 1277764..1277949 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=334399 FYA20_RS06160 WP_001130208.1 1273290..1273805(-) (luxS) [Escherichia coli O2:H6 strain PG20180057]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=334399 FYA20_RS06160 WP_001130208.1 1273290..1273805(-) (luxS) [Escherichia coli O2:H6 strain PG20180057]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment