Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FYA20_RS02865 Genome accession   NZ_CP043181
Coordinates   569601..571028 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli O2:H6 strain PG20180057     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 564601..576028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA20_RS02825 (FYA20_02825) yeeW 564785..564979 (+) 195 WP_000988601.1 DUF5983 family protein -
  FYA20_RS02830 (FYA20_02830) - 565025..565105 (+) 81 Protein_536 hypothetical protein -
  FYA20_RS02835 (FYA20_02835) - 565394..565540 (-) 147 Protein_537 transposase domain-containing protein -
  FYA20_RS02840 (FYA20_02840) - 565594..565776 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FYA20_RS02845 (FYA20_02845) tmaR 565877..566206 (-) 330 WP_000450409.1 DUF496 family protein -
  FYA20_RS02850 (FYA20_02850) yeeA 566378..567436 (-) 1059 WP_001200890.1 FUSC family protein -
  FYA20_RS02855 (FYA20_02855) sbmC 567634..568107 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  FYA20_RS02860 (FYA20_02860) dacD 568226..569392 (-) 1167 WP_001519880.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FYA20_RS02865 (FYA20_02865) sbcB 569601..571028 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  FYA20_RS02870 (FYA20_02870) plaP 571102..572460 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  FYA20_RS02875 (FYA20_02875) yoeI 572450..572512 (-) 63 WP_010723108.1 membrane protein YoeI -
  FYA20_RS02880 (FYA20_02880) yeeY 572727..573656 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  FYA20_RS02885 (FYA20_02885) yeeZ 573702..574526 (-) 825 WP_148885853.1 SDR family oxidoreductase -
  FYA20_RS02890 (FYA20_02890) yoeB 574609..574863 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  FYA20_RS02895 (FYA20_02895) yefM 574860..575111 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  FYA20_RS02900 (FYA20_02900) hisL 575394..575444 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=334389 FYA20_RS02865 WP_000980557.1 569601..571028(+) (sbcB) [Escherichia coli O2:H6 strain PG20180057]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=334389 FYA20_RS02865 WP_000980557.1 569601..571028(+) (sbcB) [Escherichia coli O2:H6 strain PG20180057]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583