Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FYA21_RS17710 Genome accession   NZ_CP043180
Coordinates   3656474..3658495 (-) Length   673 a.a.
NCBI ID   WP_096640276.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PG20180064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3651474..3663495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA21_RS17685 (FYA21_17685) - 3651493..3652167 (-) 675 WP_000468065.1 hypothetical protein -
  FYA21_RS17690 (FYA21_17690) - 3652179..3652913 (-) 735 WP_001183837.1 hypothetical protein -
  FYA21_RS17695 (FYA21_17695) - 3653063..3654520 (-) 1458 WP_000031228.1 glyceraldehyde-3-phosphate dehydrogenase -
  FYA21_RS17700 (FYA21_17700) rarD 3654737..3655684 (-) 948 WP_171292981.1 EamA family transporter RarD -
  FYA21_RS17705 (FYA21_17705) - 3655793..3656380 (-) 588 WP_000885644.1 lipocalin family protein -
  FYA21_RS17710 (FYA21_17710) uvrB 3656474..3658495 (-) 2022 WP_096640276.1 excinuclease ABC subunit UvrB Machinery gene
  FYA21_RS17715 (FYA21_17715) - 3658675..3659466 (+) 792 WP_000222202.1 hypothetical protein -
  FYA21_RS17720 (FYA21_17720) - 3659641..3661077 (+) 1437 WP_096640277.1 sensor domain-containing diguanylate cyclase -
  FYA21_RS17725 (FYA21_17725) - 3661112..3661291 (-) 180 WP_000139632.1 hypothetical protein -
  FYA21_RS17730 (FYA21_17730) - 3661499..3662728 (+) 1230 WP_000383199.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77334.09 Da        Isoelectric Point: 5.2678

>NTDB_id=334377 FYA21_RS17710 WP_096640276.1 3656474..3658495(-) (uvrB) [Acinetobacter baumannii strain PG20180064]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQYAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRTKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=334377 FYA21_RS17710 WP_096640276.1 3656474..3658495(-) (uvrB) [Acinetobacter baumannii strain PG20180064]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGTGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGCCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCCTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGACTACTATCAACCCGAGGCCTATGTTCCGTCGTC
AGATACATTTATTGAAAAAGACGCGGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCGATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGATCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACACGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAATATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGCTGGTTTGATCCGCTGACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGAGCTATCGATACCATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATTGAGCAACGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGCTACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCGGCA
GGGGAAGCACCACCGACTTTATTTGACTATGTACCAGAAGATGCCTTACTTATTATCGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACCACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACAGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCGGTGCTTACCCAAGTCGATGATGTTTTGTCTGAGATTAATATTCGTAAGAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCTTATCTGCACTCGGAT
ATTGATACGGTTGAACGTGTCAAAATTATTCATGAATTACGTACAGGCGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCTTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAAACGATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTACAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACACC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCACATTACTAAG
CTAGAGAAAGAAATGTTAAAGGCGTCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

UvrB interaction domain (UvrB_inter)

(161-251)

Ultra-violet resistance protein B (UvrB)

(553-593)

UvrB/uvrC motif (UVR)

(638-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae R6

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae D39

57.848

99.406

0.575

Multiple sequence alignment