Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   EPZ47_RS27980 Genome accession   NZ_CP035088
Coordinates   6278187..6278615 (-) Length   142 a.a.
NCBI ID   WP_135847614.1    Uniprot ID   -
Organism   Pseudomonas viciae strain 11K1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6273187..6283615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPZ47_RS27965 (EPZ47_27960) - 6275008..6277068 (-) 2061 WP_135847612.1 methyl-accepting chemotaxis protein -
  EPZ47_RS27970 (EPZ47_27965) - 6277225..6277764 (-) 540 WP_135847613.1 chemotaxis protein CheW -
  EPZ47_RS27975 (EPZ47_27970) pilH 6277775..6278140 (-) 366 WP_058544375.1 twitching motility response regulator PilH -
  EPZ47_RS27980 (EPZ47_27975) pilG 6278187..6278615 (-) 429 WP_135847614.1 response regulator Regulator
  EPZ47_RS27985 (EPZ47_27980) gshB 6278840..6279793 (+) 954 WP_135847615.1 glutathione synthase -
  EPZ47_RS27990 (EPZ47_27985) - 6279871..6280767 (+) 897 WP_135847616.1 energy transducer TonB -
  EPZ47_RS27995 (EPZ47_27990) - 6281002..6281571 (+) 570 WP_135847617.1 YqgE/AlgH family protein -
  EPZ47_RS28000 (EPZ47_27995) ruvX 6281571..6282008 (+) 438 WP_030137904.1 Holliday junction resolvase RuvX -
  EPZ47_RS28005 (EPZ47_28000) pyrR 6282095..6282601 (+) 507 WP_135847618.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15550.06 Da        Isoelectric Point: 7.4360

>NTDB_id=334346 EPZ47_RS27980 WP_135847614.1 6278187..6278615(-) (pilG) [Pseudomonas viciae strain 11K1]
MAEHLTQQQPSALKVMVIDDSKTIRRTAETLLRNVGCEVITAIDGFDALAKIADHHPGIIFVDIMMPRLDGYQTCALIKN
NSAFKATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLGAIQAHVPGFIAVQPHQAH

Nucleotide


Download         Length: 429 bp        

>NTDB_id=334346 EPZ47_RS27980 WP_135847614.1 6278187..6278615(-) (pilG) [Pseudomonas viciae strain 11K1]
ATGGCAGAGCATCTTACGCAGCAGCAACCCAGTGCCTTGAAGGTCATGGTCATCGACGACTCGAAGACCATCCGCCGCAC
CGCCGAAACCCTGCTGCGCAACGTGGGGTGCGAGGTAATCACGGCCATCGACGGCTTCGACGCCCTGGCCAAGATCGCCG
ACCATCATCCGGGCATCATCTTTGTCGACATCATGATGCCGCGCCTGGACGGTTACCAGACCTGCGCCCTGATCAAGAAC
AACAGCGCGTTCAAGGCCACGCCGGTGATCATGCTGTCGTCCCGGGACGGGTTGTTCGACAAGGCCAAGGGGCGCATCGT
CGGTTCCGATCAGTTTTTGACCAAACCGTTCAGCAAGGAAGAACTGTTGGGGGCAATACAGGCCCATGTTCCGGGCTTTA
TCGCTGTCCAGCCGCACCAGGCACATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.119

83.099

0.641

Multiple sequence alignment