Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SPT_RS11185 Genome accession   NC_012469
Coordinates   2111374..2112132 (+) Length   252 a.a.
NCBI ID   WP_000410376.1    Uniprot ID   -
Organism   Streptococcus pneumoniae Taiwan19F-14     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2106374..2117132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPT_RS11155 (SPT_2255) comE 2106971..2107723 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  SPT_RS11160 (SPT_2256) comD/comD1 2107720..2109045 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  SPT_RS11165 (SPT_2257) comC/comC1 2109066..2109191 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  SPT_RS11175 (SPT_2259) rlmH 2109473..2109952 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SPT_RS11180 (SPT_2260) htrA 2110135..2111316 (+) 1182 WP_000681597.1 S1C family serine protease Regulator
  SPT_RS11185 (SPT_2261) spo0J 2111374..2112132 (+) 759 WP_000410376.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29130.48 Da        Isoelectric Point: 8.0022

>NTDB_id=33434 SPT_RS11185 WP_000410376.1 2111374..2112132(+) (spo0J) [Streptococcus pneumoniae Taiwan19F-14]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEACAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=33434 SPT_RS11185 WP_000410376.1 2111374..2112132(+) (spo0J) [Streptococcus pneumoniae Taiwan19F-14]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCATG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment