Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   FYA21_RS00810 Genome accession   NZ_CP043180
Coordinates   168852..169367 (+) Length   171 a.a.
NCBI ID   WP_096640436.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PG20180064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163852..174367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA21_RS00790 (FYA21_00790) - 164075..165535 (+) 1461 WP_000004971.1 amino acid permease -
  FYA21_RS00795 (FYA21_00795) - 165812..167017 (+) 1206 WP_096640432.1 RtcB family protein -
  FYA21_RS18535 - 167021..167179 (+) 159 WP_000692859.1 hypothetical protein -
  FYA21_RS00805 (FYA21_00805) omp38 167400..168470 (-) 1071 WP_000777878.1 outer membrane protein Omp38 -
  FYA21_RS00810 (FYA21_00810) fimT 168852..169367 (+) 516 WP_096640436.1 GspH/FimT family pseudopilin Machinery gene
  FYA21_RS00815 (FYA21_00815) - 169476..170651 (+) 1176 WP_096640438.1 thiolase family protein -
  FYA21_RS00820 (FYA21_00820) - 170778..171221 (+) 444 WP_001176580.1 VOC family protein -
  FYA21_RS00825 (FYA21_00825) - 171264..171617 (-) 354 WP_000457783.1 DMT family transporter -
  FYA21_RS00830 (FYA21_00830) - 171699..172184 (-) 486 WP_000935250.1 DUF934 domain-containing protein -
  FYA21_RS00835 (FYA21_00835) - 172177..173820 (-) 1644 WP_096640440.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19670.90 Da        Isoelectric Point: 8.8196

>NTDB_id=334315 FYA21_RS00810 WP_096640436.1 168852..169367(+) (fimT) [Acinetobacter baumannii strain PG20180064]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMTSVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQFKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=334315 FYA21_RS00810 WP_096640436.1 168852..169367(+) (fimT) [Acinetobacter baumannii strain PG20180064]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGACATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGCTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGTTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421