Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EOV66_RS15480 Genome accession   NZ_CP043033
Coordinates   3166287..3167711 (+) Length   474 a.a.
NCBI ID   WP_039052523.1    Uniprot ID   -
Organism   Escherichia coli strain XDL     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3161287..3172711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EOV66_RS15430 (EOV66_15440) - 3161601..3161807 (+) 207 WP_000549626.1 hypothetical protein -
  EOV66_RS15435 (EOV66_15445) - 3161779..3162213 (-) 435 WP_000016389.1 hypothetical protein -
  EOV66_RS27925 (EOV66_15455) - 3162357..3162676 (+) 320 Protein_2991 hypothetical protein -
  EOV66_RS15450 (EOV66_15460) yfdR 3162758..3163294 (+) 537 WP_001401560.1 5'-deoxynucleotidase -
  EOV66_RS15455 (EOV66_15465) - 3163285..3164163 (+) 879 WP_032209648.1 phosphoadenosine phosphosulfate reductase family protein -
  EOV66_RS15460 (EOV66_15470) - 3164160..3164363 (+) 204 WP_000156999.1 hypothetical protein -
  EOV66_RS15465 (EOV66_15475) - 3164356..3164595 (+) 240 WP_072808121.1 hypothetical protein -
  EOV66_RS15470 (EOV66_15480) - 3164755..3164946 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  EOV66_RS15475 (EOV66_15485) - 3164927..3166105 (-) 1179 WP_072808118.1 site-specific integrase -
  EOV66_RS15480 (EOV66_15490) sbcB 3166287..3167711 (+) 1425 WP_039052523.1 exodeoxyribonuclease I Machinery gene
  EOV66_RS15485 (EOV66_15495) tsuB 3167754..3167981 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EOV66_RS15490 (EOV66_15500) tsuA 3167995..3169053 (-) 1059 WP_000492349.1 thiosulfate utilization transporter TsuA/YeeE -
  EOV66_RS15495 (EOV66_15505) plaP 3169232..3170590 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EOV66_RS15500 (EOV66_15510) yoeI 3170580..3170642 (-) 63 WP_010723108.1 membrane protein YoeI -
  EOV66_RS15505 (EOV66_15515) yeeY 3170857..3171786 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  EOV66_RS15510 (EOV66_15520) yeeZ 3171832..3172656 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54289.53 Da        Isoelectric Point: 5.2440

>NTDB_id=334276 EOV66_RS15480 WP_039052523.1 3166287..3167711(+) (sbcB) [Escherichia coli strain XDL]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAE
RLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=334276 EOV66_RS15480 WP_039052523.1 3166287..3167711(+) (sbcB) [Escherichia coli strain XDL]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCACCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGACGCTGAG
CGTTTAGGGATTGCTCGTCAACACTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGTTGT
GGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCGACG
CCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGATAAG
CGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCTGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586

Multiple sequence alignment