Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | EP552_RS08565 | Genome accession | NZ_CP035051 |
| Coordinates | 1778950..1779330 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain ABUH763 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1773950..1784330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EP552_RS08535 (EP552_08530) | kdsB | 1774853..1775614 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| EP552_RS08540 (EP552_08535) | - | 1775626..1776606 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| EP552_RS08545 (EP552_08540) | - | 1776618..1776959 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| EP552_RS08550 (EP552_08545) | - | 1776977..1777750 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| EP552_RS08555 (EP552_08550) | - | 1777788..1778396 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| EP552_RS08560 (EP552_08555) | - | 1778406..1778960 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| EP552_RS08565 (EP552_08560) | xcpV | 1778950..1779330 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| EP552_RS08570 (EP552_08565) | xcpW | 1779330..1780031 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| EP552_RS08575 (EP552_08570) | gspK | 1780031..1780990 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| EP552_RS08580 (EP552_08575) | - | 1781221..1781817 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| EP552_RS08585 (EP552_08580) | ung | 1781868..1782581 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| EP552_RS08590 (EP552_08585) | - | 1782578..1783702 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| EP552_RS08595 (EP552_08590) | tadA | 1783709..1784212 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=334265 EP552_RS08565 WP_000836911.1 1778950..1779330(+) (xcpV) [Acinetobacter baumannii strain ABUH763]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=334265 EP552_RS08565 WP_000836911.1 1778950..1779330(+) (xcpV) [Acinetobacter baumannii strain ABUH763]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |